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Chromatin and associated proteins constitute the highly folded structure of chromosomes. We consider a self-avoiding polymer model of the chromatin, segments of which may get cross-linked via protein binders that repel each other. The…

Soft Condensed Matter · Physics 2019-06-13 Amit Kumar , Debasish Chaudhuri

We present the general theory of Ising transitions in isotropic elastic media with vanishing thermal expansion. By constructing a minimal model with appropriate spin-lattice couplings, we show that in two dimensions near a continuous…

Statistical Mechanics · Physics 2023-01-03 Sudip Mukherjee , Abhik Basu

Twisted assemblies of filaments in ropes, cables and bundles are essential structural elements in wide use in macroscopic materials as well as within the cells and tissues of living organisms. We develop the unique, non-linear elastic…

Soft Condensed Matter · Physics 2015-05-18 Gregory M. Grason

Obstructions influence the growth and expansion of bodies in a wide range of settings -- but isolating and understanding their impact can be difficult in complex environments. Here, we study obstructed growth/expansion in a model system…

Soft Condensed Matter · Physics 2024-01-24 Abigail Plummer , Caroline Adkins , Jean-François Louf , Andrej Košmrlj , Sujit S. Datta

A directed polymer is allowed to branch, with configurations determined by global energy optimization and disorder. A finite size scaling analysis in 2D shows that, if disorder makes branching more and more favorable, a critical transition…

Statistical Mechanics · Physics 2016-08-31 Giovanni Sartoni , Attilio L. Stella

By means of two-dimensional contact dynamics simulations, we analyze the vibrational dynamics of a confined granular layer in response to harmonic forcing. We use irregular polygonal grains allowing for strong variability of solid fraction.…

Classical Physics · Physics 2016-08-16 Emilien Azema , Farhang Radjaï , Robert Peyroux , Frédéric Dubois , Gilles Saussine

We study the athermal mechanical response of deformable ring assemblies to quasistatic compression. Beyond jamming, further densification induces buckling of rings, resulting in macroscopic mechanical softening. Under cyclic compression,…

Soft Condensed Matter · Physics 2026-05-22 Rahul Nayak , Satyavani Vemparala , Pinaki Chaudhuri

Restrictions to molecular motion by barriers (membranes) are ubiquitous in biological tissues, porous media and composite materials. A major challenge is to characterize the microstructure of a material or an organism nondestructively using…

Soft Condensed Matter · Physics 2011-03-11 Dmitry S. Novikov , Els Fieremans , Jens H. Jensen , Joseph A. Helpern

A method for solving three dimensional discrete dislocation plasticity boundary-value problems using a monopole representation of the dislocations is presented. At each time step, the displacement, strain and stress fields in a finite body…

Computational Engineering, Finance, and Science · Computer Science 2024-06-06 A. Cruzado , M. P. Ariza , A. Needleman , M. Ortiz , A. A. Benzerga

We present using simple scaling arguments and one step replica symmetry breaking a theory for the localization of semiflexible polymers in a quenched random environment. In contrast to completely flexible polymers, localization of…

Soft Condensed Matter · Physics 2009-11-10 Arti Dua , Thomas A. Vilgis

When a flexible filament is confined to a fluid interface, the balance between capillary attraction, bending resistance, and tension from an external source can lead to a self-buckling instability. We perform an analysis of this instability…

Soft Condensed Matter · Physics 2013-02-12 Arthur A. Evans , Saverio E. Spagnolie , Denis Bartolo , Eric Lauga

We study the periodic buckling patterns that emerge when elastic shells are subjected to geometric confinement. Residual swelling provides access to range of shapes (saddles, rolled sheets, cylinders, and spherical sections) which vary in…

Soft Condensed Matter · Physics 2018-10-12 Lucia Stein-Montalvo , Paul Costa , Matteo Pezzulla , Douglas P. Holmes

We develop a unified scaling framework for the end-position distributions of tethered polymers confined in finite cylindrical geometries. Two observables are analysed: the longitudinal distribution P(x), along the confinement axis, and the…

Soft Condensed Matter · Physics 2025-12-16 Bibhatsu Kuiri , Rittwick Mondal , Dipankar Biswas , Soumyajyoti Kabi

We investigate the shear elastic modulus of soft polymer foams loaded with hard spherical particles and we show that, for constant bubble size and gas volume fraction, strengthening is strongly dependent on the size of those inclusions.…

Materials Science · Physics 2015-07-27 Yacine Khidas , Benjamin Haffner , Olivier Pitois

A microscopic theory of the free energy barriers and folding routes for minimally frustrated proteins is presented, greatly expanding on the presentation of the variational approach outlined previously [J. J. Portman, S. Takada, P. G.…

Soft Condensed Matter · Physics 2009-10-31 John J. Portman , Shoji Takada , Peter G. Wolynes

Commonly used linear and nonlinear constitutive material models in deformation simulation contain many simplifications and only cover a tiny part of possible material behavior. In this work we propose a framework for learning customized…

Graphics · Computer Science 2020-10-27 Bin Wang , Yuanmin Deng , Paul Kry , Uri Ascher , Hui Huang , Baoquan Chen

Materials with network-like microstructure, including polymers, are the backbone for many natural and human-made materials such as gels, biological tissues, metamaterials, and rubbers. Fracture processes in these networked materials are…

Soft Condensed Matter · Physics 2020-01-29 Ahmed Ghareeb , Ahmed Elbanna

A one-dimensional wave propagation through elastically asymmetric media is investigated. A class of metamaterials possessing an arbitrary elastic asymmetry is proposed. This asymmetry results in different wave speeds of tensile and…

Soft Condensed Matter · Physics 2021-01-26 Vladislav A. Yastrebov

We introduce a model describing the paths that pin an elastic interface moving in a disordered medium. We find that the scaling properties of these ``elastic pinning paths'' (EPP) are different from paths embedded on a directed percolation…

Condensed Matter · Physics 2007-05-23 Hernan A. Makse , Sergey Buldyrev , Heiko Leschhorn , H. Eugene Stanley

Soft elastic sheets resting on rigid surfaces develop wrinkles, rucks, and folds due to the combined influence of elasticity, gravity, and contact interactions. Despite their ubiquity, the principles governing their morphology and…

Soft Condensed Matter · Physics 2026-05-18 Keisuke Yoshida , Hirofumi Wada