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This article introduces epidemia, an R package for Bayesian, regression-oriented modeling of infectious diseases. The implemented models define a likelihood for all observed data while also explicitly modeling transmission dynamics: an…

We develop a class of non-Gaussian translation processes that extend classical stochastic differential equations (SDEs) by prescribing arbitrary absolutely continuous marginal distributions. Our approach uses a copula-based transformation…

Statistics Theory · Mathematics 2025-08-06 Robert Richardson , H. Dennis Tolley , Kenneth Kuttler

In this paper, we introduce a general framework for co-infection as cooperative SIR dynamics. We first solve analytically CGCG model [1] and then the generalized model in symmetric scenarios. We calculate transition points, order parameter,…

Populations and Evolution · Quantitative Biology 2019-07-24 Fatemeh Zarei , Saman Moghimi-Araghi , Fakhteh Ghanbarnejad

Predicting the spread of processes across complex multi-layered networks has long challenged researchers due to the intricate interplay between network structure and propagation dynamics. Each layer of these networks possesses unique…

Social and Information Networks · Computer Science 2024-10-23 Mohammad Hossein Samaei , Faryad Darabi Sahneh , Caterina Scoglio

Many applications in medical statistics as well as in other fields can be described by transitions between multiple states (e.g. from health to disease) experienced by individuals over time. In this context, multi-state models are a popular…

We study the diffusion of epidemics on networks that are partitioned into local communities. The gross structure of hierarchical networks of this kind can be described by a quotient graph. The rationale of this approach is that individuals…

Social and Information Networks · Computer Science 2016-01-19 Stefano Bonaccorsi , Stefania Ottaviano , Delio Mugnolo , Francesco De Pellegrini

This paper presents a new view of household epidemic models, where the interaction between the households is of mean field type. We thus obtain in the limit of infinitely many households a nonlinear Markov process solution of a McKean -…

Probability · Mathematics 2022-10-04 Raphael Forien , Etienne Pardoux

This paper focuses on the analysis of a stochastic SAIRS-type epidemic model that explicitly incorporates the roles of asymptomatic and symptomatic infectious individuals in disease transmission dynamics. Asymptomatic carriers, often…

Populations and Evolution · Quantitative Biology 2025-01-14 Brahim Boukanjime , Mohamed El Fatini , Mohamed Maama

We introduce an epidemic spreading model on a network using concepts from percolation theory. The model is motivated by discussing the standard SIR model, with extensions to describe effects of lockdowns within a population. The underlying…

Physics and Society · Physics 2020-08-26 Fabrizio Croccolo , H. Eduardo Roman

Disease transmission is studied through disciplines like epidemiology, applied mathematics, and statistics. Mathematical simulation models for transmission have implications in solving public and personal health challenges. The SIR model…

Populations and Evolution · Quantitative Biology 2022-01-04 R. Jayatilaka , R. Patel , M. Brar , Y. Tang , N. M. Jisrawi , F. Chishtie , J. Drozd , S. R. Valluri

Mathematical models are formal and simplified representations of the knowledge related to a phenomenon. In classical epidemic models, a neglected aspect is the heterogeneity of disease transmission and progression linked to the viral load…

Physics and Society · Physics 2022-05-10 Rossella Della Marca , Nadia Loy , Andrea Tosin

Undirected graphical models, or Markov networks, are a popular class of statistical models, used in a wide variety of applications. Popular instances of this class include Gaussian graphical models and Ising models. In many settings,…

Statistics Theory · Mathematics 2015-09-08 Eunho Yang , Pradeep Ravikumar , Genevera I. Allen , Zhandong Liu

Markov branching systems form a fundamental class of stochastic models that are extensively applied in biology, physics, finance, and other domains. These systems are distinguished by their continuous-time evolution and inherent branching…

Many economic models feature monotone Markov dynamics on state spaces that may be noncompact. Establishing existence, uniqueness, and stability of stationary distributions in such settings has required a patchwork of sufficient conditions,…

Probability · Mathematics 2026-04-07 Takashi Kamihigashi , John Stachurski

We study a stochastic epidemic model consisting of elements (organisms in a community or cells in tissue) with fixed positions, in which damage or disease is transmitted by diffusing agents ("signals") emitted by infected individuals. The…

Populations and Evolution · Quantitative Biology 2015-06-05 Fernando P. Faria , Ronald Dickman

This paper investigates the dynamics of infectious diseases with a non-exponentially distributed infectious period. This is achieved by considering a multi-stage infection model on networks. Using pairwise approximation with a standard…

Physics and Society · Physics 2015-11-23 N. Sherborne , K. B. Blyuss , I. Z. Kiss

Spreading processes on top of active dynamics provide a novel theoretical framework for capturing emerging collective behavior in living systems. I consider run-and-tumble dynamics coupled with coagulation/decoagulation reactions that lead…

Statistical Mechanics · Physics 2025-05-29 Matteo Paoluzzi

We consider a stochastic Susceptible-Exposed-Infected-Recovered (SEIR) epidemiological model. Through the use of a normal form coordinate transform, we are able to analytically derive the stochastic center manifold along with the…

Adaptation and Self-Organizing Systems · Physics 2015-05-13 Eric Forgoston , Lora Billings , Ira B. Schwartz

This paper considers the classical SIR epidemic model driven by a multidimensional L\'evy jump process. We consecrate to develop a mathematical method to obtain the asymptotic properties of the perturbed model. Our method differs from…

Probability · Mathematics 2020-02-24 Driss Kiouach , Yassine Sabbar

The recently proposed generalized epidemic modeling framework (GEMF) \cite{sahneh2013generalized} lays the groundwork for systematically constructing a broad spectrum of stochastic spreading processes over complex networks. This article…

Physics and Society · Physics 2016-04-11 Faryad Darabi Sahneh , Aram Vajdi , Heman Shakeri , Futing Fan , Caterina Scoglio