Related papers: Counting tanglegrams with species
We provide an $\Omega(n\log n) $ lower bound and an $O(n^2)$ upper bound for the smallest size of rooted binary trees (a.k.a. phylogenetic tree shapes), which are universal for rooted binary trees with $n$ leaves, i.e., contain all of them…
In 1989 Erd\H{o}s and Sz\'ekely showed that there is a bijection between (i) the set of rooted trees with $n+1$ vertices whose leaves are bijectively labeled with the elements of $[\ell]=\{1,2,\dots,\ell\}$ for some $\ell \leq n$, and (ii)…
When considering the number of subtrees of trees, the extremal structures which maximize this number among binary trees and trees with a given maximum degree lead to some interesting facts that correlate to other graphical indices in…
Tangle-tree theorems are an important tool in structural graph theory, and abstract separation systems are a very general setting in which tangle-tree theorems can still be formulated and proven. For infinite abstract separation systems, so…
We study a class of combinatorial objects that we call "decorated trees". These consist of vertices, arrows and edges, where each edge is decorated by two integers (one near each of its endpoints), each arrow is decorated by an integer, and…
Motivated by the bijection between Schnyder labelings of a plane triangulation and partitions of its inner edges into three trees, we look for binary labelings for quadrangulations (whose edges can be partitioned into two trees). Our…
A characterization is provided for each natural number except one (1) by means of an ordered pair of elements. The first element is a natural number called the type of the natural number characterized, and the second is a natural number…
Building on work by Desjarlais, Molina, Faase, and others, a general method is obtained for counting the number of spanning trees of graphs that are a product of an arbitrary graph and either a path or a cycle, of which grid graphs are a…
A 2-tree is a graph that can be formed by starting with a triangle and iterating the operation of making a new vertex adjacent to two adjacent vertices of the existing graph. Leizhen Cai asked in 1995 whether every maximal planar graph…
We revisit the problem of enumeration of vertex-tricolored planar random triangulations solved in [Nucl. Phys. B 516 [FS] (1998) 543-587] in the light of recent combinatorial developments relating classical planar graph counting problems to…
Latent tree analysis seeks to model the correlations among a set of random variables using a tree of latent variables. It was proposed as an improvement to latent class analysis --- a method widely used in social sciences and medicine to…
Species trees represent the historical divergences of populations or species, while gene trees trace the ancestry of individual gene copies sampled within those populations. In cases involving rapid speciation, gene trees with topologies…
Construction of phylogenetic trees and networks for extant species from their characters represents one of the key problems in phylogenomics. While solution to this problem is not always uniquely defined and there exist multiple methods for…
A tree $T$ on $2^n$ vertices is called set-sequential if the elements in $V(T)\cup E(T)$ can be labeled with distinct nonzero $(n+1)$-dimensional $01$-vectors such that the vector labeling each edge is the component-wise sum modulo $2$ of…
We prove that finding a rooted subtree with at least $k$ leaves in a digraph is a fixed parameter tractable problem. A similar result holds for finding rooted spanning trees with many leaves in digraphs from a wide family $\cal L$ that…
We demonstrate the versatility of the tangle-tree duality theorem for abstract separation systems by using it to prove tree-of-tangles theorems. This approach allows us to strengthen some of the existing tree-of-tangles theorems by bounding…
Traditional clustering identifies groups of objects that share certain qualities. Tangles do the converse: they identify groups of qualities that often occur together. They can thereby identify and discover 'types': of behaviour, views,…
We introduce a general method to count unlabeled combinatorial structures and to efficiently generate them at random. The approach is based on pointing unlabeled structures in an "unbiased" way that a structure of size n gives rise to n…
We would like to congratulate Lee, Nadler and Wasserman on their contribution to clustering and data reduction methods for high $p$ and low $n$ situations. A composite of clustering and traditional principal components analysis, treelets is…
Peca suggested in a recent paper on the arxiv to consider binary butterfly trees and their Horton-Strahler numbers. The trees are obtained by glueing two binary trees together in a special way; the results are again binary trees but with a…