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Relational databases (RDBs) have become the industry standard for storing massive and heterogeneous data. However, despite the widespread use of RDBs across various fields, the inherent structure of relational databases hinders their…

Databases · Computer Science 2025-08-13 Ning Li , Kounianhua Du , Han Zhang , Quan Gan , Minjie Wang , David Wipf , Weinan Zhang

Many NLP models gain performance by having access to a knowledge base. A lot of research has been devoted to devising and improving the way the knowledge base is accessed and incorporated into the model, resulting in a number of mechanisms…

Computation and Language · Computer Science 2022-01-25 Vilém Zouhar , Marius Mosbach , Debanjali Biswas , Dietrich Klakow

The adoption of Semantic Web technologies, and in particular the Open Data initiative, has contributed to the steady growth of the number of datasets and triples accessible on the Web. Most commonly, queries over RDF data are evaluated over…

Databases · Computer Science 2019-12-18 Gabriela Montoya , Ilkcan Keles , Katja Hose

As sequencing technologies become more affordable and genomic databases expand continuously, the reuse of publicly available sequencing data emerges as a powerful strategy for studying microbial pathogens. Indeed, raw sequencing reads…

Quantitative Methods · Quantitative Biology 2025-05-16 Damien Richard , Nils Poulicard

Data provenance, or data lineage, describes the life cycle of data. In scientific workflows on HPC systems, scientists often seek diverse provenance (e.g., origins of data products, usage patterns of datasets). Unfortunately, existing…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-08-03 Runzhou Han , Mai Zheng , Suren Byna , Houjun Tang , Bin Dong , Dong Dai , Yong Chen , Dongkyun Kim , Joseph Hassoun , David Thorsley , Matthew Wolf

In enterprise settings, efficiently retrieving relevant information from large and complex knowledge bases is essential for operational productivity and informed decision-making. This research presents a systematic empirical framework for…

Although RDBs store vast amounts of rich, informative data spread across interconnected tables, the progress of predictive machine learning models as applied to such tasks arguably falls well behind advances in other domains such as…

Provenance templates are now a recognised methodology for the construction of data provenance records. Each template defines the provenance of a domain-specific action in abstract form, which may then be instantiated as required by a single…

Cryptography and Security · Computer Science 2020-06-22 Elliot Fairweather , Rudolf Wittner , Martin Chapman , Petr Holub , Vasa Curcin

Deep research, in which an agent searches the open web, collects evidence, and derives an answer through extended reasoning, is a prominent use case for frontier language models. Frontier deep research products score high on existing…

Artificial Intelligence · Computer Science 2026-05-21 Sixiong Xie , Zhuofan Shi , Haiyang Shen , Jiuzheng Wang , Siqi Zhong , Mugeng Liu , Chongyang Pan , Peilun Jia , Baoqing Sun , Xiang Jing , Yun Ma

Deep neural networks (DNNs) achieve state-of-the-art results in a variety of domains. Unfortunately, DNNs are notorious for their non-interpretability, and thus limit their applicability in hypothesis-driven domains such as biology and…

Machine Learning · Computer Science 2018-03-12 Chun-Hao Chang , Ladislav Rampasek , Anna Goldenberg

Generative models for open domain question answering have proven to be competitive, without resorting to external knowledge. While promising, this approach requires to use models with billions of parameters, which are expensive to train and…

Computation and Language · Computer Science 2021-02-04 Gautier Izacard , Edouard Grave

Electronic Theses and Dissertations (ETDs) contain domain knowledge that can be used for many digital library tasks, such as analyzing citation networks and predicting research trends. Automatic metadata extraction is important to build…

Digital Libraries · Computer Science 2021-07-02 Muntabir Hasan Choudhury , Himarsha R. Jayanetti , Jian Wu , William A. Ingram , Edward A. Fox

In this paper we address the challenge of extracting scientific references from patents. We approach the problem as a sequence labelling task and investigate the merits of BERT models to the extraction of these long sequences. References in…

Information Retrieval · Computer Science 2021-03-11 Ken Voskuil , Suzan Verberne

Increasing amounts of scientific and social data are published in the Resource Description Framework (RDF). Although the RDF data can be queried using the SPARQL language, even the SPARQL-based operation has a limitation in implementing…

Databases · Computer Science 2018-12-06 Shota Matsumoto , Ryota Yamanaka , Hirokazu Chiba

In this paper, we investigate the retrievability of datasets and publications in a real-life Digital Library (DL). The measure of retrievability was originally developed to quantify the influence that a retrieval system has on the access to…

Information Retrieval · Computer Science 2022-07-22 Dwaipayan Roy , Zeljko Carevic , Philipp Mayr

Visualisation facilitates the understanding of scientific data both through exploration and explanation of visualised data. Provenance contributes to the understanding of data by containing the contributing factors behind a result. With the…

Databases · Computer Science 2015-02-06 Bilal Arshad , Kamran Munir , Richard McClatchey , Saad Liaquat

Provenance in scientific workflows is essential for understand- ing and reproducing processes, while in business processes, it can ensure compliance and correctness and facilitates process mining. However, the provenance of process…

Cryptography and Security · Computer Science 2025-10-08 Ludwig Stage , Mirela Riveni , Raimundas Matulevičius , Dimka Karastoyanova

Machine Learning (ML) has already fundamentally changed several businesses. More recently, it has also been profoundly impacting the computational science and engineering domains, like geoscience, climate science, and health science. In…

In the last years, a large number of RDF data sets has become available on the Web. However, due to the semi-structured nature of RDF data, missing values affect answer completeness of queries that are posed against this data. To overcome…

Databases · Computer Science 2015-03-11 Maribel Acosta , Elena Simperl , Fabian Flöck , Maria-Esther Vidal , Rudi Studer

Relation Extraction (RE) is one of the fundamental tasks in Information Extraction and Natural Language Processing. Dependency trees have been shown to be a very useful source of information for this task. The current deep learning models…

Computation and Language · Computer Science 2019-07-09 Amir Pouran Ben Veyseh , Thien Huu Nguyen , Dejing Dou