Related papers: Sustained oscillations in the MAP kinase cascade
Complex systems are characterized by multiple spatial and temporal scales. A natural framework to capture their multiscale nature is that of multilayer networks, where different layers represent distinct physical processes that often…
We consider classical hard-core particles moving on two parallel chains in the same direction. An interaction between the channels is included via the hopping rates. For a ring, the stationary state has a product form. For the case of…
For piecewise-smooth ordinary differential equations, the occurrence of a Hopf bifurcation on a switching surface is known as a boundary Hopf bifurcation. Boundary Hopf bifurcations are codimension-two, so occur at points in two-parameter…
Feedback circuits in biochemical networks which underly cellular signaling pathways are important elements in creating complex behavior. A specific aspect thereof is how stability of equilibrium points depends on model parameters. For…
The spontaneous generation of electrical activity underpins a number of essential physiological processes, and is observed even in tissues where specialized pacemaker cells have not been identified. The emergence of periodic oscillations in…
We discuss ``cascade mixing", where one particle mixture, say a B0, leads to another, say a K0. A simple analysis is possible in the amplitude approach, which avoids ``collapses of the wavefunction" and is explicitly covariant. Some novel…
Homoclinic snaking refers to the sinusoidal snaking continuation curve of homoclinic orbits near a heteroclinic cycle connecting an equilibrium E and a periodic orbit P. Along this curve the homoclinic orbit performs more and more windings…
We consider a network of identical pulse-coupled oscillators with delay and all-to-all coupling. We demonstrate that the discontinuous nature of the dynamics induces the appearance of isochronous regions---subsets of the phase space filled…
The Rock-Paper-Scissors (RPS) game and its generalizations with ${\cal S}>3$ species are well studied models for cyclically interacting populations. Four is, however, the minimum number of species that, by allowing other interactions beyond…
We revisit the classical Suarez-Schopf delayed oscillator. Special attention is paid to the region of linear stability in the space of parameters. By means of the theory of inertial manifolds developed in our adjacent papers, we provide…
We explain the setup for using the pde2path libraries for Hopf bifurcation and continuation of branches of periodic orbits and give implementation details of the associated demo directories. See [Uecker, Comm. in Comp. Phys., 2019] for a…
We track the secondary bifurcations of coherent states in plane Couette flow and show that they undergo an incomplete periodic doubling cascade that ends with a crisis bifurcation. We introduce a symbolic dynamics for the orbits and show…
Inter-layer synchronization is a distinctive process of multiplex networks whereby each node in a given layer undergoes a synchronous evolution with all its replicas in other layers, irrespective of whether or not it is synchronized with…
The present paper points out to a novel scenario for formation of chaotic attractors in a class of models of excitable cell membranes near an Andronov-Hopf bifurcation (AHB). The mechanism underlying chaotic dynamics admits a simple and…
An inverse problem framework for constructing reaction systems with prescribed properties is presented. Kinetic transformations are defined and analysed as a part of the framework, allowing an arbitrary polynomial ordinary differential…
In a previous paper we introduced examples of Hamiltonian mappings with phase space structures resembling circle packings. It was shown that a vast number of periodic orbits can be found using special properties. We now use this information…
The stable and unstable manifolds of an invariant set of a piecewise-smooth map are themselves piecewise-smooth. Consequently, as parameters of a piecewise-smooth map are varied, an invariant set can develop a homoclinic connection when its…
This work deals with the construction of networks of topological defects in models described by a single complex scalar field. We take advantage of the deformation procedure recently used to describe kinklike defects in order to build…
We study a class of multi-parameter three-dimensional systems of ordinary differential equations that exhibit dynamics on three distinct timescales. We apply geometric singular perturbation theory to explore the dependence of the geometry…
We treat synchronization for iterated function systems generated by diffeomorphisms on compact manifolds. Synchronization here means the convergence of orbits starting at different initial conditions when iterated by the same sequence of…