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A graph is a mathematical object consisting of a set of vertices and a set of edges connecting vertices. Graphs can be drawn on paper in various ways, but until recently all published methods of drawing graphs have had undesirable…

Human-Computer Interaction · Computer Science 2014-05-22 Bob Blakley , G R Blakley , Sean M Blakley

The human brain is a complex system, and understanding its mechanisms has been a long-standing challenge in neuroscience. The study of the functional connectome, which maps the functional connections between different brain regions, has…

Neural and Evolutionary Computing · Computer Science 2025-04-14 Tananun Songdechakraiwut , Yutong Wu

The application of network techniques to the analysis of neural data has greatly improved our ability to quantify and describe these rich interacting systems. Among many important contributions, networks have proven useful in identifying…

Quantitative Methods · Quantitative Biology 2018-06-14 Ann E. Sizemore , Jennifer Phillips-Cremins , Robert Ghrist , Danielle S. Bassett

Topological drawings are natural representations of graphs in the plane, where vertices are represented by points, and edges by curves connecting the points. Topological drawings of complete graphs and of complete bipartite graphs have been…

Computational Geometry · Computer Science 2017-02-10 Jean Cardinal , Stefan Felsner

We seize the opportunity of the publication of selected papers from the \emph{Logic, categories, semantics} workshop in the \emph{Journal of Applied Logic} to survey some current trends in logic, namely intuitionistic and linear type…

Category Theory · Mathematics 2014-02-07 Jean Gillibert , Christian Retoré

A linkage is a finite graph with lengths assigned to each edge. A planar realization is a map to the plane which preserves edge lengths. It can be thought of as a mechanical device formed from stiff rods and rotating joints. We look at the…

Algebraic Geometry · Mathematics 2007-05-23 Henry C. King

A construction of polytopes is given based on integers. These geometries are constructed through a mapping to pure numbers and have multiple applications, including statistical mechanics and computer science. The number form is useful in…

General Physics · Physics 2007-05-23 Gordon Chalmers

In this note, I describe a formalism for treating knots as geometric spaces, and make an application to a simple statistical mechanics computation. The motivation for this study is the natural visual symmetry of the knot, and I describe how…

Statistical Mechanics · Physics 2013-07-04 Robert Kariotis

The topology of any complex system is key to understanding its structure and function. Fundamentally, algebraic topology guarantees that any system represented by a network can be understood through its closed paths. The length of each path…

Methodology · Statistics 2017-05-17 Pierre-André G. Maugis , Sofia C. Olhede , Patrick J. Wolfe

The interaction between a turbulent convective boundary layer (CBL) and the underlying land surface is an important research problem in the geosciences. In order to model this interaction adequately, it is necessary to develop tools which…

Data Analysis, Statistics and Probability · Physics 2019-06-10 José Licón-Saláiz , Cedrick Ansorge

The integration and transmission of information in the brain are dependent on the interplay between structural and dynamical properties. Implicit in any pursuit aimed at understanding neural dynamics from appropriate sets of mathematically…

Neurons and Cognition · Quantitative Biology 2020-06-30 Joshua M. Roldan , Sebastian Pardo G. , Vivek Kurien George , Gabriel A. Silva

The human connectome represents a network map of the brain's wiring diagram and the pattern into which its connections are organized is thought to play an important role in cognitive function. The generative rules that shape the topology of…

One of the themes in algebraic geometry is the study of the relation between the ``topology'' of a smooth projective variety and a (``general'') hyperplane section. Recent results of Nori produce cohomological evidence for a conjecture that…

alg-geom · Mathematics 2008-02-03 Kapil H. Paranjape

This paper builds a novel bridge between algebraic coding theory and mathematical knot theory, with applications in both directions. We give methods to construct error-correcting codes starting from the colorings of a knot, describing…

Information Theory · Computer Science 2025-12-19 Altan B. Kilic , Anne Nijsten , Ruud Pellikaan , Alberto Ravagnani

Researchers in the field of connectomics are working to reconstruct a map of neural connections in the brain in order to understand at a fundamental level how the brain processes information. Constructing this wiring diagram is done by…

Textual-edge Graphs (TEGs), characterized by rich text annotations on edges, are increasingly significant in network science due to their ability to capture rich contextual information among entities. Existing works have proposed various…

Social and Information Networks · Computer Science 2024-11-19 Chen Ling , Zhuofeng Li , Yuntong Hu , Zheng Zhang , Zhongyuan Liu , Shuang Zheng , Jian Pei , Liang Zhao

We study topological properties of the graph topology.

General Topology · Mathematics 2012-07-09 Lubica Hola

Representing knowledge as high-dimensional vectors in a continuous semantic vector space can help overcome the brittleness and incompleteness of traditional knowledge bases. We present a method for performing deductive reasoning directly in…

Artificial Intelligence · Computer Science 2017-07-12 Douglas Summers-Stay

This manuscript presents an approach for simultaneously optimizing the connectivity and elevation of grid-shell structures acting in pure compression (or pure tension) under the combined effects of a prescribed external loading and the…

Computational Engineering, Finance, and Science · Computer Science 2025-05-14 Helen E. Fairclough , Karol Bolbotowski , Linwei He , Andrew Liew , Matthew Gilbert

The logical depth of a graph $G$ is the minimum quantifier depth of a first order sentence defining $G$ up to isomorphism in the language of the adjacency and the equality relations. We consider the case that $G$ is a dissection of a convex…

Combinatorics · Mathematics 2007-05-23 Manuel Bodirsky , Mihyun Kang , Oleg Verbitsky