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We investigate the statistical properties of two dimensional random cellular systems (froths) in term of their shell structure. The froth is analyzed as a system of concentric layers of cells around a given central cell. We derive exact…

Disordered Systems and Neural Networks · Physics 2009-10-28 T. Aste , K. Y. Szeto , W. Y. Tam

Highly periodic structures are often said to convey the beauty of nature. However, most material properties are strongly influenced by the defects they contain. On the mesoscopic scale, molecular self-assembly exemplifies this interplay;…

We use Topological Data Analysis tools for studying the inner organization of cells in segmented images of epithelial tissues. More specifically, for each segmented image, we compute different persistence barcodes, which codify lifetime of…

Computer Vision and Pattern Recognition · Computer Science 2022-04-11 N. Atienza , M. J. Jimenez , M. Soriano-Trigueros

Understanding the geometry and topology of configuration or conformational spaces of molecules has relevant applications in chemistry and biology such as the proteins folding problem, drug design and the structure activity relationship…

Quantitative Methods · Quantitative Biology 2019-07-19 Ingrid Membrillo-Solis , Mariam Pirashvili , Lee Steinberg , Jacek Brodzki , Jeremy G. Frey

Understanding the physics of supercooled liquids near glassy transition remains one of the major challenges in condensed matter science. There has been long recognized that supercooled liquids have spatially dynamical heterogeneity whose…

Statistical Mechanics · Physics 2023-07-10 Viet Nguyen , Xueyu Song

As amorphous materials get jammed, both geometric and dynamic heterogeneity are observed. We investigate the correlation between the local geometric heterogeneity and local rearrangements in a slowly compressed bidisperse…

Soft Condensed Matter · Physics 2024-03-21 Xin Du , Eric R. Weeks

The multipole concept, which characterizes the spacial distribution of scalar and vector objects by their angular dependence, has already become widely used in various areas of physics. In recent years it has become employed to…

Strongly Correlated Electrons · Physics 2018-04-04 Michi-To Suzuki , Hiroaki Ikeda , Peter M. Oppeneer

Modeling microstructures is an interesting problem not just in Materials Science but also in Mathematics and Statistics. The most basic model for steel microstructure is the Poisson-Voronoi diagram. It has mathematically attractive…

Applications · Statistics 2019-03-01 Martina Vittorietti , Piet J. J. Kok , Jilt Sietsma , Wei Li , Geurt Jongbloed

Durable interest in developing a framework for the detailed structure of glassy materials has produced numerous structural descriptors that trade off between general applicability and interpretability. However, none approach the combination…

Disordered Systems and Neural Networks · Physics 2022-11-16 Thomas J. Hardin , Michael Chandross , Rahul Meena , Spencer Fajardo , Dimitris Giovanis , Ioannis G. Kevrekidis , Michael Falk , Michael Shields

Perturbed lattices provide simple models for studying many physical systems. In this paper we study the distribution of Voronoi chains, blocks, and clusters with prescribed combinatorial features in the perturbed square lattice,…

Statistical Mechanics · Physics 2020-10-27 Emanuel A. Lazar , Amir Shoan

In the early 2000s, low dimensional systems were predicted to have topologically nontrivial polar structures, such as vortices or skyrmions, depending on mechanical or electrical boundary conditions. A few variants of these structures have…

The study of topology in solids is undergoing a renaissance following renewed interest in the properties of ferroic domain walls as well as recent discoveries regarding topological insulators and skyrmionic lattices. Each of these systems…

Materials Science · Physics 2021-03-09 Sinead M. Griffin , Nicola A. Spaldin

We combine a conventional harmonic analysis of vibrations in a one-atomic model glass of soft spheres with a Voronoi-Delaunay geometrical analysis of the structure. ``Structure potentials'' (tetragonality, sphericity or perfectness) are…

Disordered Systems and Neural Networks · Physics 2009-10-31 V. A. Luchnikov , N. N. Medvedev , Yu. I. Naberukhin , H. R. Schober

Characterizing structural inhomogeneity is an essential step in understanding the mechanical response of amorphous materials. We introduce a threshold-free measure based on the field of vectors pointing from the center of each particle to…

Soft Condensed Matter · Physics 2016-03-02 Jennifer M. Rieser , Carl P. Goodrich , Andrea J. Liu , Douglas J. Durian

The notion of topology in physical systems is associated with the existence of a nonlocal ordering that is insensitive to a large class of perturbations. This brings robustness to the behaviour of the system and can serve as a ground for…

Quantum Gases · Physics 2022-06-08 Marco Di Liberto , Andreas Kruckenhauser , Peter Zoller , Mikhail A. Baranov

Developing robust representations of chemical structures that enable models to learn topological inductive biases is challenging. In this manuscript, we present a representation of atomistic systems. We begin by proving that our…

Machine Learning · Computer Science 2024-09-27 Rahul Khorana , Marcus Noack , Jin Qian

Chromonic liquid crystals (CLCs) are lyotropic materials which are attracting growing interest for their adaptability to living systems. A considerable body of works has been devoted to exploring their properties and applications. In this…

Soft Condensed Matter · Physics 2025-09-04 Silvia Paparini

Hyperuniformity, the suppression of density fluctuations at large length scales, is observed across a wide variety of domains, from cosmology to condensed matter and biological systems. Although the standard definition of hyperuniformity…

Statistical Mechanics · Physics 2024-05-07 Marco Salvalaglio , Dominic J. Skinner , Jörn Dunkel , Axel Voigt

We present a new numerical scheme to study systems of non-convex, irregular, and punctured particles in an efficient manner. We employ this method to analyze regular packings of odd-shaped bodies, not only from a nanoparticle but also both…

Soft Condensed Matter · Physics 2015-05-28 Joost de Graaf , René van Roij , Marjolein Dijkstra

The advent of high-resolution electron and scanning probe microscopy imaging has opened the floodgates for acquiring atomically resolved images of bulk materials, 2D materials, and surfaces. This plethora of data contains an immense volume…

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