Related papers: Ribosome Flow Model on a Ring
Duality relations for simple exclusion processes with general open boundaries are discussed. It is shown that a combination of spin operators and bosonic operators enables us to have an unified discussion for the duality relations with the…
We present new results for the current as a function of transmission rate in the one dimensional totally asymmetric simple exclusion process (TASEP) with a blockage that lowers the jump rate at one site from one to r < 1. Exact finite…
Considering the large deviations of activity and current in the Asymmetric Simple Exclusion Process (ASEP), we show that there exists a non-trivial correspondence between the joint scaled cumulant generating functions of activity and…
We present explicit formulas for total crossing events in the multi-species asymmetric exclusion process ($r$-ASEP) with underlying $U_q(\widehat{\mathfrak{sl}}_{r+1})$ symmetry. In the case of the two-species TASEP these can be derived…
In the asymmetric simple exclusion process on the integers each particle waits exponential time, then with probability p it moves one step to the right if the site is unoccupied, otherwise it stays put; and with probability q=1-p it moves…
We show that the known matrix representations of the stationary state algebra of the Asymmetric Simple Exclusion Process (ASEP) can be interpreted combinatorially as various weighted lattice paths. This interpretation enables us to use the…
In this paper, we study an exact solution of the asymmetric simple exclusion process on a periodic lattice of finite sites with two typical updates, i.e., random and parallel. Then, we find that the explicit formulas for the partition…
We give a recursive construction of the stationary distribution of multi-type asymmetric simple exclusion processes on a finite ring or on the infinite line $Z$. The construction can be interpreted in terms of "multi-line diagrams" or…
We develope a theoretical framework, based on exclusion process, that is motivated by a biological phenomenon called transcript slippage (TS). In this model a discrete lattice represents a DNA strand while each of the particles that hop on…
We develop a stochastic model for the programmed frameshift of ribosomes synthesizing a protein while moving along a mRNA template. Normally the reading frame of a ribosome decodes successive triplets of nucleotides on the mRNA in a…
This paper studies the mixing behavior of the Asymmetric Simple Exclusion Process (ASEP) on a segment of length $N$. Our main result is that for particle densities in $(0,1),$ the total-variation cutoff window of ASEP is $N^{1/3}$ and the…
Many biological processes are supported by special molecules, called motor proteins or molecular motors, that transport cellular cargoes along linear protein filaments and can reversibly associate to their tracks. Stimulated by these…
Using Monte Carlo simulations and a domain wall theory, we discuss the effect of coupling several totally asymmetric simple exclusion processes (TASEPs) to a finite reservoir of particles. This simple model mimics directed biological…
The ABC model is a driven diffusive exclusion model, composed of three species of particles that hop on a ring with local asymmetric rates. In the weak asymmetry limit, where the asymmetry vanishes with the length of the system, the model…
The totally asymmetric simple exclusion process (TASEP) is a paradigmatic stochastic model for non-equilibrium physics, and has been successfully applied to describe active transport of molecular motors along cytoskeletal filaments.…
Smooth transportation has drawn the attention of many researchers and practitioners in several fields. In the present paper, we propose a modified model of a totally asymmetric simple exclusion process (TASEP), which includes multiple…
We study a generalization of the asymmetric simple inclusion process (ASIP) on a periodic one-dimensional lattice, where the integers in the particles rates are deformed to their $t$-analogues. We call this the $(q, t, \theta)$~ASIP, where…
We revisit the totally asymmetric simple exclusion process with open boundaries (TASEP), focussing on the recent discovery by de Gier and Essler that the model has a dynamical transition along a nontrivial line in the phase diagram. This…
For a given inhomogeneous exclusion processes on $N$ sites between two reservoirs, the trajectories probabilities allow to identify the relevant local empirical observables and to obtain the corresponding rate function at Level 2.5. In…
Motor protein motion on biopolymers can be described by models related to the totally asymmetric simple exclusion process (TASEP). Inspired by experiments on the motion of kinesin-4 motors on antiparallel microtubule overlaps, we analyze a…