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Ecology and evolution are inseparable. Motivated by some recent experiments, we have developed models of evolutionary ecology from the perspective of dynamic networks. In these models, in addition to the intra-node dynamics, which…

Populations and Evolution · Quantitative Biology 2009-11-10 Debashish Chowdhury , Dietrich Stauffer

Biological information processing networks consist of many components, which are coupled by an even larger number of complex multivariate interactions. However, analyses of data sets from fields as diverse as neuroscience, molecular…

Quantitative Methods · Quantitative Biology 2016-03-23 Lina Merchan , Ilya Nemenman

Cognitive function requires the coordination of neural activity across many scales, from neurons and circuits to large-scale networks. As such, it is unlikely that an explanatory framework focused upon any single scale will yield a…

Neurons and Cognition · Quantitative Biology 2018-01-19 Luca Cocchi , Leonardo L. Gollo , Andrew Zalesky , Michael Breakspear

From critical infrastructure, to physiology and the human brain, complex systems rarely occur in isolation. Instead, the functioning of nodes in one system often promotes or suppresses the functioning of nodes in another. Despite advances…

Statistical Mechanics · Physics 2019-02-20 Michael M. Danziger , Ivan Bonamassa , Stefano Boccaletti , Shlomo Havlin

Advances in neural recording methods enable sampling from populations of thousands of neurons during the performance of behavioral tasks, raising the question of how recorded activity relates to the theoretical models of computations…

Neurons and Cognition · Quantitative Biology 2020-07-01 Audrey J. Sederberg , Ilya Nemenman

We describe a mechanism for biological learning and adaptation based on two simple principles: (I) Neuronal activity propagates only through the network's strongest synaptic connections (extremal dynamics), and (II) The strengths of active…

Disordered Systems and Neural Networks · Physics 2009-10-31 Per Bak , Dante R Chialvo

Persistent economic competition is often justified as a mechanism of innovation, efficiency, and welfare maximization. Yet empirical evidence across disciplines reveals that competition systematically generates fragility, inequality, and…

Theoretical Economics · Economics 2025-06-16 Marcelo S. Tedesco , Gonzalo Marquez

Despite their claimed biological plausibility, most self organizing networks have strict topological constraints and consequently they cannot take into account a wide range of external stimuli. Furthermore their evolution is conditioned by…

General Physics · Physics 2010-04-26 Ignazio Licata , Luigi Lella

If one isolated species is supposed to evolve following the logistic mapping, then we are tempted to think that the dynamics of two species can be expressed by a coupled system of two discrete logistic equations. As three basic…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 R. Lopez-Ruiz , D. Fournier-Prunaret

Biological and social systems are structured at multiple scales, and the incentives of individuals who interact in a group may diverge from the collective incentive of the group as a whole. Mechanisms to resolve this tension are responsible…

Populations and Evolution · Quantitative Biology 2023-05-31 Daniel B. Cooney , Simon A. Levin , Yoichiro Mori , Joshua B. Plotkin

We explore the interplay of network structure, topology, and dynamic interactions between nodes using the paradigm of distributed synchronization in a network of coupled oscillators. As the network evolves to a global steady state,…

Disordered Systems and Neural Networks · Physics 2015-06-04 Kristina Lerman , Rumi Ghosh

We study the emerging large-scale structures in networks subject to selective pressures that simultaneously drive towards higher modularity and robustness against random failures. We construct maximum-entropy null models that isolate the…

Physics and Society · Physics 2020-09-30 Sebastian Morel-Balbi , Tiago P. Peixoto

If one isolated species (corporation) is supposed to evolve following the logistic mapping, then we are tempted to think that the dynamics of two species (corporations) can be expressed by a coupled system of two discrete logistic…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Ricardo Lopez-Ruiz , Daniele Fournier-Prunaret

A rigorous understanding of brain dynamics and function requires a conceptual bridge between multiple levels of organization, including neural spiking and network-level population activity. Mounting evidence suggests that neural networks of…

Neurons and Cognition · Quantitative Biology 2016-10-11 Yahya Karimipanah , Zhengyu Ma , Ralf Wessel

Diverse biological networks exhibit universal features distinguished from those of random networks, calling much attention to their origins and implications. Here we propose a minimal evolution model of Boolean regulatory networks, which…

Molecular Networks · Quantitative Biology 2014-11-26 Deok-Sun Lee

We consider the coupling between two networks, each having N nodes whose individual dynamics is modeled by a two-state master equation. The intra-network interactions are all to all, whereas the inter-network interactions involve only a…

Adaptation and Self-Organizing Systems · Physics 2015-08-14 Malgorzata Turalska , Adam Svenkeson , Bruce J. West

Understanding the influence of structure of dispersal network on the species persistence and modeling a much realistic species dispersal in nature are two central issues in spatial ecology. A realistic dispersal structure which favors the…

Adaptation and Self-Organizing Systems · Physics 2017-10-18 Anubhav Gupta , Tanmoy Banerjee , Partha Sharathi Dutta

Biological and social networks have recently attracted enormous attention between physicists. Among several, two main aspects may be stressed: A non trivial topology of the graph describing the mutual interactions between agents exists…

Statistical Mechanics · Physics 2015-05-19 Adriano Barra , Elena Agliari

We investigate the synaptic noise as a novel mechanism for creating critical avalanches in the activity of neural networks. We model neurons and chemical synapses by dynamical maps with a uniform noise term in the synaptic coupling. An…

Disordered Systems and Neural Networks · Physics 2015-10-07 Mauricio Girardi-Schappo , Osame Kinouchi , Marcelo H. R. Tragtenberg

In this overview, we discuss the connections between the observations of critical dynamics in neuronal networks and the maximum entropy models that are often used as statistical models of neural activity, focusing in particular on the…

Neurons and Cognition · Quantitative Biology 2018-12-24 Martino Sorbaro , J. Michael Herrmann , Matthias H. Hennig
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