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One of the defining features of living systems is their adaptability to changing environmental conditions. This requires organisms to extract temporal and spatial features of their environment, and use that information to compute the…

Neurons and Cognition · Quantitative Biology 2024-02-27 Maria Sol Vidal-Saez , Oscar Vilarroya , Jordi Garcia-Ojalvo

Self-organized network dynamics prevails for systems across physics, biology and engineering. How external signals generate distributed responses in networked systems fundamentally underlies their function, yet is far from fully understood.…

Adaptation and Self-Organizing Systems · Physics 2019-08-05 Xiaozhu Zhang , Sarah Hallerberg , Moritz Matthiae , Dirk Witthaut , Marc Timme

Whole-brain computational modeling based on structural connectivity has shown great promise in successfully simulating fMRI BOLD signals with temporal co-activation patterns that are highly similar to empirical functional connectivity…

Neurons and Cognition · Quantitative Biology 2019-11-14 Neda Kaboodvand , Martijn P van den Heuvel , Peter Fransson

Recurrent neural networks (RNNs) are machine learning models widely used for learning temporal relationships. Current state-of-the-art RNNs use integrating or spiking neurons -- two classes of computing units whose outputs depend directly…

Neural and Evolutionary Computing · Computer Science 2025-06-10 Peter DelMastro , Arjun Karuvally , Hananel Hazan , Hava Siegelmann , Edward Rietman

Recurrent neural networks (RNNs) can implement complex computations by leveraging a range of dynamics, such as oscillations, attractors, and transient trajectories. A growing body of work has highlighted the emergence of phase codes, a type…

Neurons and Cognition · Quantitative Biology 2025-12-02 Keith T. Murray

The relation between neural activity and behaviorally relevant variables is at the heart of neuroscience research. When strong, this relation is termed a neural representation. There is increasing evidence, however, for partial…

Neurons and Cognition · Quantitative Biology 2024-08-05 Friedrich Schuessler , Francesca Mastrogiuseppe , Srdjan Ostojic , Omri Barak

Brain oscillations exhibit long-range temporal correlations (LRTCs), which reflect the regularity of their fluctuations: low values representing more random (decorrelated) while high values more persistent (correlated) dynamics. LRTCs…

Neurons and Cognition · Quantitative Biology 2018-02-05 Tomas Ros , Paul Frewen , Jean Theberge , Rosemarie Kluetsch , Andreas Mueller , Gian Candrian , Rakesh Jetly , Patrik Vuilleumier , Ruth Lanius

We analyze the dynamics of the neural circuit of the lamprey central pattern generator (CPG). This analysis provides insights into how neural interactions form oscillators and enable spontaneous oscillations in a network of damped…

Neurons and Cognition · Quantitative Biology 2009-11-10 Li Zhaoping , Alex Lewis , Silvia Scarpetta

Random networks of symmetrically coupled, excitable elements can self-organize into coherently oscillating states if the networks contain loops (indeed loops are abundant in random networks) and if the initial conditions are sufficiently…

Disordered Systems and Neural Networks · Physics 2015-05-19 Patrick McGraw , Michael Menzinger

Functional oscillator networks, such as neuronal networks in the brain, exhibit switching between metastable states involving many oscillators. We give exact results how such global dynamics can arise in paradigmatic phase oscillator…

Adaptation and Self-Organizing Systems · Physics 2018-05-09 Christian Bick

Recurrently coupled oscillators that are sufficiently heterogeneous and/or randomly coupled can show an asynchronous activity in which there are no significant correlations among the units of the network. The asynchronous state can…

Neurons and Cognition · Quantitative Biology 2023-05-03 Jonas Ranft , Benjamin Lindner

Oscillations represent a ubiquitous phenomenon in biological systems. The conventional models of biological periodic oscillations are usually proposed as interconnecting transcriptional feedback loops. Some specific proteins function as…

Pattern Formation and Solitons · Physics 2013-05-29 Yue Ma , Kenichi Yoshikawa

Tremendous progress has been made in sequential processing with the recent advances in recurrent neural networks. However, recurrent architectures face the challenge of exploding/vanishing gradients during training, and require significant…

Neural and Evolutionary Computing · Computer Science 2021-10-13 Bing Han , Cheng Wang , Kaushik Roy

Oscillatory dynamics are common features of complex networks, often playing essential roles in regulating function. Across scales from gene regulatory networks to ecosystems, delayed feedback mechanisms are key drivers of system-scale…

Disordered Systems and Neural Networks · Physics 2026-03-06 Shijie Liu , Jinliang Han , Jianming Liu , Tim Rogers , Yongzheng Sun

Human cognition emerges from coordinated spiking dynamics in distributed neural circuits, where information is encoded via both firing rates and precise spike timing determined by brain rhythms. Inspired by this notion, we propose a…

Neurons and Cognition · Quantitative Biology 2026-05-05 Tingting Dan , Guorong Wu

Neural oscillations are universal phenomena and can be observed at different levels of neural systems, from single neuron to macroscopic brain. The frequency of those oscillations are related to the brain functions. However, little is know…

Neurons and Cognition · Quantitative Biology 2015-07-30 Lianchun Yu , Longfei Wang , Fei Jia , Duojie Jia

The temporal activity of many biological systems, including neural circuits, exhibits fluctuations simultaneously varying over a large range of timescales. The mechanisms leading to this temporal heterogeneity are yet unknown. Here we show…

Disordered Systems and Neural Networks · Physics 2022-08-03 Merav Stern , Nicolae Istrate , Luca Mazzucato

Neural dynamics is triggered by discrete synaptic inputs of finite amplitude. However, the neural response is usually obtained within the diffusion approximation (DA) representing the synaptic inputs as Gaussian noise. We derive a…

Neurons and Cognition · Quantitative Biology 2025-05-29 Denis S. Goldobin , Matteo di Volo , Alessandro Torcini

Encoding models are used for predicting brain activity in response to sensory stimuli with the objective of elucidating how sensory information is represented in the brain. Encoding models typically comprise a nonlinear transformation of…

Neurons and Cognition · Quantitative Biology 2017-03-13 Umut Güçlü , Marcel A. J. van Gerven

Networks of stochastic spiking neurons are interesting models in the area of Theoretical Neuroscience, presenting both continuous and discontinuous phase transitions. Here we study fully connected networks analytically, numerically and by…

Adaptation and Self-Organizing Systems · Physics 2017-10-16 Ariadne A. Costa , Ludmila Brochini , Osame Kinouchi