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Capturing the semantics of related biological concepts, such as genes and mutations, is of significant importance to many research tasks in computational biology such as protein-protein interaction detection, gene-drug association…

Computation and Language · Computer Science 2020-07-01 Qingyu Chen , Kyubum Lee , Shankai Yan , Sun Kim , Chih-Hsuan Wei , Zhiyong Lu

Generative models, such as large language models or text-to-image diffusion models, can generate relevant responses to user-given queries. Response-based vector embeddings of generative models facilitate statistical analysis and inference…

Machine Learning · Statistics 2025-11-12 Aranyak Acharyya , Joshua Agterberg , Youngser Park , Carey E. Priebe

Topic modeling is a widely used approach for analyzing and exploring large document collections. Recent research efforts have incorporated pre-trained contextualized language models, such as BERT embeddings, into topic modeling. However,…

Computation and Language · Computer Science 2025-02-18 Suman Adhya , Debarshi Kumar Sanyal

It has been reliably shown that the similarity of word embeddings obtained from popular neural models such as BERT approximates effectively a form of semantic similarity of the meaning of those words. It is therefore natural to wonder if…

Artificial Intelligence · Computer Science 2024-08-02 Mathieu d'Aquin , Emmanuel Nauer

Network embedding methods aim at learning low-dimensional latent representation of nodes in a network. While achieving competitive performance on a variety of network inference tasks such as node classification and link prediction, these…

Social and Information Networks · Computer Science 2018-09-17 Haochen Chen , Xiaofei Sun , Yingtao Tian , Bryan Perozzi , Muhao Chen , Steven Skiena

Representation learning has recently been successfully used to create vector representations of entities in language learning, recommender systems and in similarity learning. Graph embeddings exploit the locality structure of a graph and…

Machine Learning · Computer Science 2020-02-24 Shalin Shah , Venkataramana Kini

Existing knowledge graph (KG) embedding models have primarily focused on static KGs. However, real-world KGs do not remain static, but rather evolve and grow in tandem with the development of KG applications. Consequently, new facts and…

Computation and Language · Computer Science 2023-04-11 Yuanning Cui , Yuxin Wang , Zequn Sun , Wenqiang Liu , Yiqiao Jiang , Kexin Han , Wei Hu

Network data are ubiquitous in modern machine learning, with tasks of interest including node classification, node clustering and link prediction. A frequent approach begins by learning an Euclidean embedding of the network, to which…

Machine Learning · Statistics 2023-05-18 Andrew Davison , Morgane Austern

Research using YouTube data often explores social and semantic dimensions of channels and videos. Typically, analyses rely on laborious manual annotation of content and content creators, often found by low-recall methods such as keyword…

Computers and Society · Computer Science 2023-07-03 Léopaul Boesinger , Manoel Horta Ribeiro , Veniamin Veselovsky , Robert West

A Bayesian network is a graphical model that encodes probabilistic relationships among variables of interest. When used in conjunction with statistical techniques, the graphical model has several advantages for data analysis. One, because…

Machine Learning · Computer Science 2022-01-11 David Heckerman

There has been a surge of recent interest in learning representations for graph-structured data. Graph representation learning methods have generally fallen into three main categories, based on the availability of labeled data. The first,…

Machine Learning · Computer Science 2022-04-13 Ines Chami , Sami Abu-El-Haija , Bryan Perozzi , Christopher Ré , Kevin Murphy

The multimodal recommendation has gradually become the infrastructure of online media platforms, enabling them to provide personalized service to users through a joint modeling of user historical behaviors (e.g., purchases, clicks) and item…

Information Retrieval · Computer Science 2024-04-19 Zhiqiang Guo , Jianjun Li , Guohui Li , Chaoyang Wang , Si Shi , Bin Ruan

Link prediction is critical for the application of incomplete knowledge graph (KG) in the downstream tasks. As a family of effective approaches for link predictions, embedding methods try to learn low-rank representations for both entities…

Computation and Language · Computer Science 2019-11-22 Canran Xu , Ruijiang Li

Bilingual word embeddings have been widely used to capture the similarity of lexical semantics in different human languages. However, many applications, such as cross-lingual semantic search and question answering, can be largely benefited…

Computation and Language · Computer Science 2019-09-10 Muhao Chen , Yingtao Tian , Haochen Chen , Kai-Wei Chang , Steven Skiena , Carlo Zaniolo

Predicting missing links between entities in a knowledge graph is a fundamental task to deal with the incompleteness of data on the Web. Knowledge graph embeddings map nodes into a vector space to predict new links, scoring them according…

Artificial Intelligence · Computer Science 2023-02-14 Cosimo Gregucci , Mojtaba Nayyeri , Daniel Hernández , Steffen Staab

Dense word embeddings, which encode semantic meanings of words to low dimensional vector spaces have become very popular in natural language processing (NLP) research due to their state-of-the-art performances in many NLP tasks. Word…

Computation and Language · Computer Science 2018-07-20 Lutfi Kerem Senel , Ihsan Utlu , Veysel Yucesoy , Aykut Koc , Tolga Cukur

Learning effective recipe representations is essential in food studies. Unlike what has been developed for image-based recipe retrieval or learning structural text embeddings, the combined effect of multi-modal information (i.e., recipe…

Machine Learning · Computer Science 2022-05-26 Yijun Tian , Chuxu Zhang , Zhichun Guo , Yihong Ma , Ronald Metoyer , Nitesh V. Chawla

Although deep neural networks have shown well-performance in various tasks, the poor interpretability of the models is always criticized. In the paper, we propose a new interpretable neural network method, by embedding neurons into the…

Machine Learning · Computer Science 2022-11-16 Wei Han , Yangqiming Wang , Christian Böhm , Junming Shao

Machine learning provides algorithms that can learn from data and make inferences or predictions on data. Bayesian networks are a class of graphical models that allow to represent a collection of random variables and their condititional…

Artificial Intelligence · Computer Science 2019-01-08 Robert Leppert , Karl-Heinz Zimmermann

The rapid proliferation of the Internet and the widespread adoption of social networks have significantly accelerated information dissemination. However, this transformation has introduced complexities in information capture and processing,…

Social and Information Networks · Computer Science 2025-03-06 Yuchuan Jiang , Chaolong Jia , Yunyi Qin , Wei Cai , Yongsen Qian