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The human connectome has become the very frequent subject of study of brain-scientists, psychologists, and imaging experts in the last decade. With diffusion magnetic resonance imaging techniques, unified with advanced data processing…

Neurons and Cognition · Quantitative Biology 2019-07-24 Mate Fellner , Balint Varga , Vince Grolmusz

Mind-map generation aims to process a document into a hierarchical structure to show its central idea and branches. Such a manner is more conducive to understanding the logic and semantics of the document than plain text. Recently, a…

Computation and Language · Computer Science 2023-12-20 Zhuowei Zhang , Mengting Hu , Yinhao Bai , Zhen Zhang

Edmonds, Lov\'asz, and Pulleyblank showed that if a matching covered graph has a nontrivial tight cut, then it also has a nontrivial ELP-cut. Carvalho et al. gave a stronger conjecture: if a matching covered graph has a nontrivial tight cut…

Combinatorics · Mathematics 2023-06-22 Xiao Zhao , Sheng Chen

We consider the problem of estimating the topology of multiple networks from nodal observations, where these networks are assumed to be drawn from the same (unknown) random graph model. We adopt a graphon as our random graph model, which is…

Machine Learning · Statistics 2022-12-21 Madeline Navarro , Santiago Segarra

A graph $G$ is called equiarboreal if the number of spanning trees containing a given edge in $G$ is independent of the choice of edge. In [Combinatorica 1(2) (1981) 163--167], Godsil proved that any graph which is a colour class in an…

Combinatorics · Mathematics 2025-12-30 Wensheng Sun , Yujun Yang , Shou-Jun Xu

Entity interaction prediction is essential in many important applications such as chemistry, biology, material science, and medical science. The problem becomes quite challenging when each entity is represented by a complex structure,…

Machine Learning · Computer Science 2021-04-13 Hanchen Wang , Defu Lian , Ying Zhang , Lu Qin , Xuemin Lin

Graph-based machine learning methods are useful tools in the identification and prediction of variation in genetic data. In particular, the comprehension of phenotypic effects at the cellular level is an accelerating research area in…

Quantitative Methods · Quantitative Biology 2024-12-06 Nandini Gadhia , Michalis Smyrnakis , Po-Yu Liu , Damer Blake , Melanie Hay , Anh Nguyen , Dominic Richards , Dong Xia , Ritesh Krishna

Convolutional neural networks (CNN) have been frequently used to extract subject-invariant features from electroencephalogram (EEG) for classification tasks. This approach holds the underlying assumption that electrodes are equidistant…

Machine Learning · Computer Science 2021-06-18 Andac Demir , Toshiaki Koike-Akino , Ye Wang , Masaki Haruna , Deniz Erdogmus

The connective eccentric index of a graph is a topological index involving degrees and eccentricities of vertices of the graph. In this paper, we have studied the connective eccentric index for double graph and double cover. Also we give…

Combinatorics · Mathematics 2014-06-03 Nilanjan De , Anita Pal , Sk. Md. Abu Nayeem

Network science has been extensively developed to characterize structural properties of complex systems, including brain networks inferred from neuroimaging data. As a result of the inference process, networks estimated from experimentally…

Neurons and Cognition · Quantitative Biology 2017-03-10 Catalina Obando , Fabrizio De Vico Fallani

The human brain is the most complex object of study we encounter today. Mapping the neuronal-level connections between the more than 80 billion neurons in the brain is a hopeless task for science. By the recent advancement of magnetic…

Neurons and Cognition · Quantitative Biology 2020-09-01 Balint Varga , Vince Grolmusz

The connected graph of degree sequence 3,3,3,1,1,1 is called a net, and the vertices of degree 1 in a net is called its endvertices. Broersma conjectured in 1993 that a 2-connected graph G with no induced K_{1,3} is hamiltonian if every…

Combinatorics · Mathematics 2018-03-28 Shuya Chiba , Jun Fujisawa

As an efficient model for knowledge organization, the knowledge graph has been widely adopted in several fields, e.g., biomedicine, sociology, and education. And there is a steady trend of learning embedding representations of knowledge…

Computation and Language · Computer Science 2024-04-01 Siyu Yao , Ruijie Wang , Shen Sun , Derui Bu , Jun Liu

A new heuristic based on vertex invariants is developed to rapidly distinguish non-isomorphic graphs to a desired level of accuracy. The method is applied to sample subgraphs from an E.coli protein interaction network, and as a probe for…

Quantitative Methods · Quantitative Biology 2009-11-13 Kim Baskerville , Maya Paczuski

We study external, electrical perturbations and their responses in the brain dynamic network of the \textit{Caenorhabditis elegans} soil worm, given by the connectome of its large somatic nervous system. Our analysis is inspired by a…

Neurons and Cognition · Quantitative Biology 2016-02-17 Chris G. Antonopoulos

In order to model entanglements of polymers in a confined region, we consider the linking numbers and writhes of cycles in random linear embeddings of complete graphs in a cube. Our main results are that for a random linear embedding of…

Geometric Topology · Mathematics 2016-02-02 Erica Flapan , Kenji Kozai

The atom-bond connectivity (ABC) index is a degree-based molecular structure descriptor that can be used for modelling thermodynamic properties of organic chemical compounds. Motivated by its applicable potential, a series of investigations…

Combinatorics · Mathematics 2016-10-11 Darko Dimitrov , Barbara Ikica , Riste Škrekovski

We enumerate rooted 2-connected and 3-connected surface maps with respect to vertices and edges. We also derive the bivariate version of the large face-width result for random 3-connected maps. These results are then used to derive…

Combinatorics · Mathematics 2010-03-16 E. A. Bender , Z. Gao

Omics data, such as transcriptomics, proteomics, and metabolomics, provide critical insights into disease mechanisms and clinical outcomes. However, their high dimensionality, small sample sizes, and intricate biological networks pose major…

Machine Learning · Computer Science 2026-01-22 Tiantian Yang , Yuxuan Wang , Zhenwei Zhou , Ching-Ti Liu

Inspired by a concept in comparative genomics, we investigate properties of randomly chosen members of G_1(m,n,t), the set of bipartite graphs with $m$ left vertices, n right vertices, t edges, and each vertex of degree at least one. We…

Probability · Mathematics 2007-05-23 Jonah Blasiak , Rick Durrett
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