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We here present SIMLR (Single-cell Interpretation via Multi-kernel LeaRning), an open-source tool that implements a novel framework to learn a sample-to-sample similarity measure from expression data observed for heterogenous samples. SIMLR…

Genomics · Quantitative Biology 2018-01-22 Bo Wang , Daniele Ramazzotti , Luca De Sano , Junjie Zhu , Emma Pierson , Serafim Batzoglou

Time series data, including univariate and multivariate ones, are characterized by unique composition and complex multi-scale temporal variations. They often require special consideration of decomposition and multi-scale modeling to…

Machine Learning · Computer Science 2024-03-26 Shuhan Zhong , Sizhe Song , Weipeng Zhuo , Guanyao Li , Yang Liu , S. -H. Gary Chan

Spatial pooling (SP) and cross-channel pooling (CCP) operators have been applied to aggregate spatial features and pixel-wise features from feature maps in deep neural networks (DNNs), respectively. Their main goal is to reduce computation…

Computer Vision and Pattern Recognition · Computer Science 2024-08-16 Xiaoqing Zhang , Qiushi Nie , Zunjie Xiao , Jilu Zhao , Xiao Wu , Pengxin Guo , Runzhi Li , Jin Liu , Yanjie Wei , Yi Pan

We present Decapodes, a diagrammatic tool for representing, composing, and solving partial differential equations. Decapodes provides an intuitive diagrammatic representation of the relationships between variables in a system of equations,…

Numerical Analysis · Mathematics 2024-02-01 Luke Morris , Andrew Baas , Jesus Arias , Maia Gatlin , Evan Patterson , James P. Fairbanks

We present a probabilistic graphical model formulation for the graph clustering problem. This enables to locally represent uncertainty of image partitions by approximate marginal distributions in a mathematically substantiated way, and to…

Computer Vision and Pattern Recognition · Computer Science 2016-01-12 Jörg Hendrik Kappes , Paul Swoboda , Bogdan Savchynskyy , Tamir Hazan , Christoph Schnörr

We introduce the interactive tool pandemonium to cluster model predictions that depend on a set of parameters. The model predictions are used to define the coordinates in observable space which go into the clustering. The results of this…

Data Analysis, Statistics and Probability · Physics 2021-12-21 Ursula Laa , German Valencia

Multiplexed imaging data are revolutionizing our understanding of the composition and organization of tissues and tumors. A critical aspect of such tissue profiling is quantifying the spatial relationship relationships among cells at…

Quantitative Methods · Quantitative Biology 2024-05-06 Ajit J. Nirmal , Peter K. Sorger

Clustering is indispensable for data analysis in many scientific disciplines. Detecting clusters from heavy noise remains challenging, particularly for high-dimensional sparse data. Based on graph-theoretic framework, the present paper…

Computer Vision and Pattern Recognition · Computer Science 2014-07-08 Deli Zhao , Xiaoou Tang

A novel methodology is proposed for clustering multivariate time series data using energy distance defined in Sz\'ekely and Rizzo (2013). Specifically, a dissimilarity matrix is formed using the energy distance statistic to measure…

Methodology · Statistics 2024-03-13 Richard A. Davis , Leon Fernandes , Konstantinos Fokianos

Typical R-convolution graph kernels invoke the kernel functions that decompose graphs into non-isomorphic substructures and compare them. However, overlooking implicit similarities and topological position information between those…

Machine Learning · Computer Science 2024-05-10 Shuhao Tang , Hao Tian , Xiaofeng Cao , Wei Ye

Hypergraphs are useful mathematical models for describing complex relationships among members of a structured graph, while hyperdigraphs serve as a generalization that can encode asymmetric relationships in the data. However, obtaining…

Algebraic Topology · Mathematics 2023-04-10 Dong Chen , Jian Liu , Jie Wu , Guo-Wei Wei

Multi-view clustering has attracted growing attention owing to its capabilities of aggregating information from various sources and its promising horizons in public affairs. Up till now, many advanced approaches have been proposed in recent…

Computer Vision and Pattern Recognition · Computer Science 2024-04-10 Qiyuan Ou , Siwei Wang , Pei Zhang , Sihang Zhou , En Zhu

Learning from longitudinal electronic health records is limited if it does not capture the temporal trajectories of the patient's state in a clinical setting. Graph models allow us to capture the hidden dependencies of the multivariate…

Machine Learning · Computer Science 2025-03-31 Munib Mesinovic , Soheila Molaei , Peter Watkinson , Tingting Zhu

Museums, libraries, and other cultural institutions continue to prioritize and build web-based visualization systems that increase access and discovery to digitized archives. Prominent examples exist that illustrate impressive…

Human-Computer Interaction · Computer Science 2020-09-07 Taylor Arnold , Nathaniel Ayers , Justin Madron , Robert Nelson , Lauren Tilton

We describe a novel approach for exploring, visualizing and modelling of complex textile structures. We show this approach in action for the exploration of weft-knitted spacer fabrics. The modelling tools are readily available and represent…

Computers and Society · Computer Science 2022-06-02 Suzanne Oude Hengel , Loe Feijs

We propose tabular two-dimensional correlation analysis for extracting features from multifaceted characterization data, essential for understanding material properties. This method visualizes similarities and phase lags in structural…

This paper presents an algorithm for sampling random variables that allows to separation of the sampling process into subproblems by dividing the sample space into overlapping parts. The subproblems can be solved independently of each other…

Computation · Statistics 2016-01-26 Jonas Hallgren , Timo Koski

Graph partitioning has long been seen as a viable approach to address Graph DBMS scalability. A partitioning, however, may introduce extra query processing latency unless it is sensitive to a specific query workload, and optimised to…

Databases · Computer Science 2016-06-24 Hugo Firth , Paolo Missier

Maps provide robots with crucial environmental knowledge, thereby enabling them to perform interactive tasks effectively. Easily accessing accurate abstract-to-detailed geometric and semantic concepts from maps is crucial for robots to make…

Robotics · Computer Science 2024-03-26 Tianshuai Hu , Jianhao Jiao , Yucheng Xu , Hongji Liu , Sheng Wang , Ming Liu

The recent success of hybrid methods in monocular odometry has led to many attempts to generalize the performance gains to hybrid monocular SLAM. However, most attempts fall short in several respects, with the most prominent issue being the…

Robotics · Computer Science 2023-06-14 Georges Younes , Douaa Khalil , John Zelek , Daniel Asmar
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