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Graph Neural Networks (GNNs) have been widely adopted for drug discovery with molecular graphs. Nevertheless, current GNNs mainly excel in leveraging short-range interactions (SRI) but struggle to capture long-range interactions (LRI), both…

Machine Learning · Computer Science 2024-04-02 Xuan Li , Zhanke Zhou , Jiangchao Yao , Yu Rong , Lu Zhang , Bo Han

There is a perceived dichotomy between structure-based and descriptor-based molecular representations used for predictive chemistry tasks. Here, we study the performance, generalizability, and interpretability of the recently proposed…

Chemical Physics · Physics 2022-03-14 Thijs Stuyver , Connor W. Coley

Convolutional neural networks (CNNs) are similar to "ordinary" neural networks in the sense that they are made up of hidden layers consisting of neurons with "learnable" parameters. These neurons receive inputs, performs a dot product, and…

Computer Vision and Pattern Recognition · Computer Science 2019-02-08 Abien Fred Agarap

Nitrogen vacancy (NV) centers in diamond are atom-scale defects with long spin coherence times that can be used to sense magnetic fields with high sensitivity and spatial resolution. Typically, the magnetic field projection at a single…

While Annealing Machines (AM) have shown increasing capabilities in solving complex combinatorial problems, positioning themselves as a more immediate alternative to the expected advances of future fully quantum solutions, there are still…

Artificial Intelligence · Computer Science 2025-01-13 Pablo Loyola , Kento Hasegawa , Andres Hoyos-Idobro , Kazuo Ono , Toyotaro Suzumura , Yu Hirate , Masanao Yamaoka

This study was groundbreaking in its application of neural network models for nitrate management in the Recirculating Aquaculture System (RAS). A hybrid neural network model was proposed, which accurately predicted daily nitrate…

Computational Engineering, Finance, and Science · Computer Science 2024-01-17 Xiangyu Fan , Jiaxin Lia , Yingzhe Wang , Yingsha Qu , Hao Li , Keming Qu , Zhengguo Cui

Machine learning models for 3D molecular property prediction typically rely on atom-based representations, which may overlook subtle physical information. Electron density maps -- the direct output of X-ray crystallography and cryo-electron…

Machine Learning · Computer Science 2025-12-01 Patricia Suriana , Joshua A. Rackers , Ewa M. Nowara , Pedro O. Pinheiro , John M. Nicoloudis , Vishnu Sresht

A data-driven approach called CaNN (Calibration Neural Network) is proposed to calibrate financial asset price models using an Artificial Neural Network (ANN). Determining optimal values of the model parameters is formulated as training…

Computational Finance · Quantitative Finance 2020-02-03 Shuaiqiang Liu , Anastasia Borovykh , Lech A. Grzelak , Cornelis W. Oosterlee

Binding energy is a fundamental thermodynamic property that governs molecular interactions, playing a crucial role in fields such as healthcare and the natural sciences. It is particularly relevant in drug development, vaccine design, and…

Quantum Physics · Physics 2025-08-06 Erico Souza Teixeira , Lucas Barros Fernandes , Yara Rodrigues Inácio

We present an inference method utilizing artificial neural networks for parameter estimation of a quantum probe monitored through a single continuous measurement. Unlike existing approaches focusing on the diffusive signals generated by…

Neural networks (NN) play a central role in modern Artificial intelligence (AI) technology and has been successfully used in areas such as natural language processing and image recognition. While majority of NN applications focus on…

Machine Learning · Statistics 2022-12-19 Xiaoxi Shen , Chang Jiang , Lyudmila Sakhanenko , Qing Lu

Artificial neural networks bridge input data into output results by approximately encoding the function that relates them. This is achieved after training the network with a collection of known inputs and results leading to an adjustment of…

Quantum Physics · Physics 2021-09-01 Yue Ban , Javier Echanobe , Yongcheng Ding , Ricardo Puebla , Jorge Casanova

We explore different strategies to integrate prior domain knowledge into the design of a deep neural network (DNN). We focus on graph neural networks (GNN), with a use case of estimating the potential energy of chemical systems (molecules…

Machine Learning · Computer Science 2022-08-26 Jay Morgan , Adeline Paiement , Christian Klinke

Audio-visual recognition (AVR) has been considered as a solution for speech recognition tasks when the audio is corrupted, as well as a visual recognition method used for speaker verification in multi-speaker scenarios. The approach of AVR…

Computer Vision and Pattern Recognition · Computer Science 2017-11-01 Amirsina Torfi , Seyed Mehdi Iranmanesh , Nasser M. Nasrabadi , Jeremy Dawson

Recently, a novel two-phase framework named mol-infer for inference of chemical compounds with prescribed abstract structures and desired property values has been proposed. The framework mol-infer is primarily based on using mixed integer…

Machine Learning · Computer Science 2025-07-08 Jianshen Zhu , Naveed Ahmed Azam , Kazuya Haraguchi , Liang Zhao , Tatsuya Akutsu

Dedicated analog neurocomputing circuits are promising for high-throughput, low power consumption applications of machine learning (ML) and for applications where implementing a digital computer is unwieldy (remote locations; small, mobile,…

Neural and Evolutionary Computing · Computer Science 2025-11-18 Ye min Thant , Methawee Nukunudompanich , Chu-Chen Chueh , Manabu Ihara , Sergei Manzhos

A new deep neural network based on the WaveNet architecture (WNN) is presented, which is designed to grasp specific patterns in the NMR spectra. When trained at a fixed non-uniform sampling (NUS) schedule, the WNN benefits from pattern…

Biomolecules · Quantitative Biology 2022-12-05 Amir Jahangiri , Xiao Han , Dmitry Lesovoy , Tatiana Agback , Peter Agback , Adnane Achour , Vladislav Orekhov

We demonstrate that GaN formed in a Nanowall Network (NwN) morphology can overcome fundamental limitations in optoelectronic devices, and enable high light extraction and effective Mg incorporation for efficient p-GaN. We report the growth…

Materials Science · Physics 2016-12-01 Sanjay Kumar Nayak , Mukul Gupta , S. M. Shivaprasad

Deep neural networks (DNNs) are powerful black-box predictors that have achieved impressive performance on a wide variety of tasks. However, their accuracy comes at the cost of intelligibility: it is usually unclear how they make their…

Machine Learning · Computer Science 2021-10-26 Rishabh Agarwal , Levi Melnick , Nicholas Frosst , Xuezhou Zhang , Ben Lengerich , Rich Caruana , Geoffrey Hinton
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