Related papers: Compressed Data Structures for Dynamic Sequences
Finding the longest common subsequence in $k$-length substrings (LCS$k$) is a recently proposed problem motivated by computational biology. This is a generalization of the well-known LCS problem in which matching symbols from two sequences…
The traditional methods for data compression are typically based on the symbol-level statistics, with the information source modeled as a long sequence of i.i.d. random variables or a stochastic process, thus establishing the fundamental…
In today's data-centric world, fast and effective compression of data is paramount. To measure success towards the second goal, Kempa and Prezza [STOC2018] introduce the string attractor, a combinatorial object unifying dictionary-based…
The Lempel-Ziv 77 (LZ77) factorization is a fundamental compression scheme widely used in text processing and data compression. In this work, we investigate the time complexity of maintaining the LZ77 factorization of a dynamic string. By…
This paper considers fully dynamic graph algorithms with both faster worst case update time and sublinear space. The fully dynamic graph connectivity problem is the following: given a graph on a fixed set of n nodes, process an online…
Geometric set cover is a classical problem in computational geometry, which has been extensively studied in the past. In the dynamic version of the problem, points and ranges may be inserted and deleted, and our goal is to efficiently…
This paper presents a general technique for optimally transforming any dynamic data structure that operates on atomic and indivisible keys by constant-time comparisons, into a data structure that handles unbounded-length keys whose…
String diagrams are an increasingly popular algebraic language for the analysis of graphical models of computations across different research fields. Whereas string diagrams have been thoroughly studied as semantic structures, much less…
Data deduplication saves storage space by identifying and removing repeats in the data stream. Compared with traditional compression methods, data deduplication schemes are more time efficient and are thus widely used in large scale storage…
We study data structures in the presence of adversarial noise. We want to encode a given object in a succinct data structure that enables us to efficiently answer specific queries about the object, even if the data structure has been…
In this paper, we extend the notion of gapped strings to elastic-degenerate strings. An elastic-degenerate string can been seen as an ordered collection of k > 1 seeds (substrings/subpatterns) interleaved by elastic-degenerate symbols such…
We consider the {\it indexable dictionary} problem, which consists of storing a set $S \subseteq \{0,...,m-1\}$ for some integer $m$, while supporting the operations of $\Rank(x)$, which returns the number of elements in $S$ that are less…
Consider the problem of maintaining a family $F$ of dynamic sets subject to insertions, deletions, and set-intersection reporting queries: given $S,S'\in F$, report every member of $S\cap S'$ in any order. We show that in the word RAM…
Given a sequence $S$ of length $n$, a letter-duplicated subsequence is a subsequence of $S$ in the form of $x_1^{d_1}x_2^{d_2}\cdots x_k^{d_k}$ with $x_i\in\Sigma$, $x_j\neq x_{j+1}$ and $d_i\geq 2$ for all $i$ in $[k]$ and $j$ in $[k-1]$.…
We propose `Dracula', a new framework for unsupervised feature selection from sequential data such as text. Dracula learns a dictionary of $n$-grams that efficiently compresses a given corpus and recursively compresses its own dictionary;…
Rank and select queries on bitmaps are essential building bricks of many compressed data structures, including text indexes, membership and range supporting spatial data structures, compressed graphs, and more. Theoretically considered yet…
We give a simple algorithm for maintaining a $n^{o(1)}$-approximate spanner $H$ of a graph $G$ with $n$ vertices as $G$ receives edge updates by reduction to the dynamic All-Pairs Shortest Paths (APSP) problem. Given an initially empty…
In the classic longest common substring (LCS) problem, we are given two strings $S$ and $T$, each of length at most $n$, over an alphabet of size $\sigma$, and we are asked to find a longest string occurring as a fragment of both $S$ and…
In the computational-mechanics structural analysis of one-dimensional cellular automata the following automata-theoretic analogue of the \emph{change-point problem} from time series analysis arises: \emph{Given a string $\sigma$ and a…
While in many graph mining applications it is crucial to handle a stream of updates efficiently in terms of {\em both} time and space, not much was known about achieving such type of algorithm. In this paper we study this issue for a…