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Graph generation techniques are increasingly being adopted for drug discovery. Previous graph generation approaches have utilized relatively small molecular building blocks such as atoms or simple cycles, limiting their effectiveness to…

Machine Learning · Computer Science 2020-04-21 Wengong Jin , Regina Barzilay , Tommi Jaakkola

We consider the optimisation problem of adding $k$ links to a given network, such that the resulting effective graph resistance is as small as possible. The problem was recently proven to be NP-hard, such that optimal solutions obtained…

Data Structures and Algorithms · Computer Science 2025-01-08 Massimo A. Achterberg , Robert E. Kooij

Transformers have revolutionized the field of machine learning. In particular, they can be used to solve complex algorithmic problems, including graph-based tasks. In such algorithmic tasks a key question is what is the minimal size of a…

Machine Learning · Computer Science 2026-01-29 Gilad Yehudai , Clayton Sanford , Maya Bechler-Speicher , Orr Fischer , Ran Gilad-Bachrach , Amir Globerson

Current modularity-based community detection algorithms attempt to find cluster memberships that maximize modularity within a fixed graph topology. Diverging from this conventional approach, our work introduces a novel strategy that employs…

Data Analysis, Statistics and Probability · Physics 2024-02-27 Yongyu Wang , Shiqi Hao , Xiaoyang Wang , Xiaotian Zhuang

We investigate polynomial-time preprocessing for the problem of hitting forbidden minors in a graph, using the framework of kernelization. For a fixed finite set of connected graphs F, the F-Deletion problem is the following: given a graph…

Computational Complexity · Computer Science 2018-04-25 Bart M. P. Jansen , Astrid Pieterse

The even cycle problem for both undirected and directed graphs has been the topic of intense research in the last decade. In this paper, we study the computational complexity of \emph{cycle length modularity problems}. Roughly speaking, in…

Computational Complexity · Computer Science 2007-05-23 Edith Hemaspaandra , Holger Spakowski , Mayur Thakur

The focus of this paper is two fold. Firstly, we present a logical approach to graph modification problems such as minimum node deletion, edge deletion, edge augmentation problems by expressing them as an expression in first order (FO)…

Logic in Computer Science · Computer Science 2017-11-09 Kona Harshita , Sounaka Mishra , Renjith. P , N. Sadagopan

Communities are clusters of nodes with a higher than average density of internal connections. Their detection is of great relevance to better understand the structure and hierarchies present in a network. Modularity has become a standard…

Physics and Society · Physics 2015-03-17 Filippo Radicchi , Andrea Lancichinetti , José J. Ramasco

Temporal graphs provide a useful model for many real-world networks. Unfortunately the majority of algorithmic problems we might consider on such graphs are intractable. There has been recent progress in defining structural parameters which…

Discrete Mathematics · Computer Science 2024-11-20 Jessica Enright , Samuel D. Hand , Laura Larios-Jones , Kitty Meeks

This work is motivated by the necessity to automate the discovery of structure in vast and evergrowing collection of relational data commonly represented as graphs, for example genomic networks. A novel algorithm, dubbed Graphitour, for…

Data Structures and Algorithms · Computer Science 2017-05-25 Leonid Peshkin

Given a Counting Monadic Second Order (CMSO) sentence $\psi$, the CMSO$[\psi]$ problem is defined as follows. The input to CMSO$[\psi]$ is a graph $G$, and the objective is to determine whether $G\models \psi$. Our main theorem states that…

Data Structures and Algorithms · Computer Science 2018-02-06 Daniel Lokshtanov , M. S. Ramanujan , Saket Saurabh , Meirav Zehavi

For a graph class ${\cal H}$, the graph parameters elimination distance to ${\cal H}$ (denoted by ${\bf ed}_{\cal H}$) [Bulian and Dawar, Algorithmica, 2016], and ${\cal H}$-treewidth (denoted by ${\bf tw}_{\cal H}$) [Eiben et al. JCSS,…

Data Structures and Algorithms · Computer Science 2022-01-10 Akanksha Agrawal , Lawqueen Kanesh , Daniel Lokshtanov , Fahad Panolan , M. S. Ramanujan , Saket Saurabh , Meirav Zehavi

This paper investigates the relations between modular graph forms, which are generalizations of the modular graph functions that were introduced in earlier papers motivated by the structure of the low energy expansion of genus-one Type II…

High Energy Physics - Theory · Physics 2018-07-03 Eric D'Hoker , Michael B. Green

The C-Planarity problem asks for a drawing of a $\textit{clustered graph}$, i.e., a graph whose vertices belong to properly nested clusters, in which each cluster is represented by a simple closed region with no edge-edge crossings, no…

Data Structures and Algorithms · Computer Science 2018-03-16 Giordano Da Lozzo , David Eppstein , Michael T. Goodrich , Siddharth Gupta

A graph is well-covered if all its maximal independent sets have the same cardinality. This well studied concept was introduced by Plummer in 1970 and naturally generalizes to the weighted case. Given a graph $G$, a real-valued vertex…

Combinatorics · Mathematics 2023-10-20 Martin Milanič , Nevena Pivač

A graph $G$ covers a graph $H$ if there exists a locally bijective homomorphism from $G$ to $H$. We deal with regular covers where this homomorphism is prescribed by the action of a semiregular subgroup of $\textrm{Aut}(G)$. We study…

Discrete Mathematics · Computer Science 2017-01-31 Jiří Fiala , Pavel Klavík , Jan Kratochvíl , Roman Nedela

We study a general class of problems called F-deletion problems. In an F-deletion problem, we are asked whether a subset of at most $k$ vertices can be deleted from a graph $G$ such that the resulting graph does not contain as a minor any…

Data Structures and Algorithms · Computer Science 2010-10-08 Fedor V. Fomin , Daniel Lokshtanov , Neeldhara Misra , Geevarghese Philip , Saket Saurabh

Fixed parameter tractable (FPT) algorithms run in time f(p(x)) poly(|x|), where f is an arbitrary function of some parameter p of the input x and poly is some polynomial function. Treewidth, branchwidth, cliquewidth, NLC-width, rankwidth,…

Combinatorics · Mathematics 2018-02-20 Jakub Marecek

Natural Language Processing (NLP) provides highly effective tools for interpreting and handling human language, offering a broad spectrum of applications. In this paper, we address a classic combinatorial problem -- finding graph partitions…

Social and Information Networks · Computer Science 2026-03-02 Marco D'Elia , Irene Finocchi , Maurizio Patrignani

Many tractable algorithms for solving the Constraint Satisfaction Problem (CSP) have been developed using the notion of the treewidth of some graph derived from the input CSP instance. In particular, the incidence graph of the CSP instance…

Logic in Computer Science · Computer Science 2015-05-19 M. Praveen
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