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This paper presents a new, parallel implementation of clustering and demonstrates its utility in greatly speeding up the process of identifying homologous proteins. Clustering is a technique to reduce the number of comparison needed to find…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-08-29 Stuart Byma , Akash Dhasade , Adrian Altenhoff , Christophe Dessimoz , James R. Larus

Correlation clustering is a widely studied framework for clustering based on pairwise similarity and dissimilarity scores, but its best approximation algorithms rely on impractical linear programming relaxations. We present faster…

Data Structures and Algorithms · Computer Science 2022-06-27 Nate Veldt

Correlation clustering provides a method for separating the vertices of a signed graph into the optimum number of clusters without specifying that number in advance. The main goal in this type of clustering is to minimize the number of…

Combinatorics · Mathematics 2025-07-15 Leila Parsaei-Majd

Clustering problems have numerous applications and are becoming more challenging as the size of the data increases. In this paper, we consider designing clustering algorithms that can be used in MapReduce, the most popular programming…

Distributed, Parallel, and Cluster Computing · Computer Science 2011-09-09 Alina Ene , Sungjin Im , Benjamin Moseley

The article introduces a new method for applying Quantum Clustering to graph structures. Quantum Clustering (QC) is a novel density-based unsupervised learning method that determines cluster centers by constructing a potential function. In…

Machine Learning · Computer Science 2025-01-17 Zhe Wang , ZhiJie He , Ding Liu

Given a graph with positive and negative edge labels, the correlation clustering problem aims to cluster the nodes so to minimize the total number of between-cluster positive and within-cluster negative edges. This problem has many…

Data Structures and Algorithms · Computer Science 2024-06-17 Mina Dalirrooyfard , Konstantin Makarychev , Slobodan Mitrović

The Correlation Clustering problem is one of the most extensively studied clustering formulations due to its wide applications in machine learning, data mining, computational biology and other areas. We consider the Correlation Clustering…

Data Structures and Algorithms · Computer Science 2025-03-04 Jianqi Zhou , Zhongyi Zhang , Jiong Guo

We revisit the simultaneous approximation model for the correlation clustering problem introduced by Davies, Moseley, and Newman[DMN24]. The objective is to find a clustering that minimizes given norms of the disagreement vector over all…

Data Structures and Algorithms · Computer Science 2024-10-23 Nairen Cao , Shi Li , Jia Ye

Graph clustering and community detection are central problems in modern data mining. The increasing need for analyzing billion-scale data calls for faster and more scalable algorithms for these problems. There are certain trade-offs between…

Social and Information Networks · Computer Science 2021-08-05 Jessica Shi , Laxman Dhulipala , David Eisenstat , Jakub Łącki , Vahab Mirrokni

Connected clustering denotes a family of constrained clustering problems in which we are given a distance metric and an undirected connectivity graph $G$ that can be completely unrelated to the metric. The aim is to partition the $n$…

Data Structures and Algorithms · Computer Science 2025-11-25 Jan Eube , Heiko Röglin

Clustering is a fundamental tool for analyzing large data sets. A rich body of work has been devoted to designing data-stream algorithms for the relevant optimization problems such as $k$-center, $k$-median, and $k$-means. Such algorithms…

Data Structures and Algorithms · Computer Science 2018-12-06 Kook Jin Ahn , Graham Cormode , Sudipto Guha , Andrew McGregor , Anthony Wirth

Several clustering frameworks with interactive (semi-supervised) queries have been studied in the past. Recently, clustering with same-cluster queries has become popular. An algorithm in this setting has access to an oracle with full…

Data Structures and Algorithms · Computer Science 2019-08-15 Barna Saha , Sanjay Subramanian

Quantum computing is a promising paradigm based on quantum theory for performing fast computations. Quantum algorithms are expected to surpass their classical counterparts in terms of computational complexity for certain tasks, including…

This paper studies the hierarchical clustering problem, where the goal is to produce a dendrogram that represents clusters at varying scales of a data set. We propose the ParChain framework for designing parallel hierarchical agglomerative…

Data Structures and Algorithms · Computer Science 2022-02-15 Shangdi Yu , Yiqiu Wang , Yan Gu , Laxman Dhulipala , Julian Shun

Clustering plays a crucial role in computer science, facilitating data analysis and problem-solving across numerous fields. By partitioning large datasets into meaningful groups, clustering reveals hidden structures and relationships within…

Databases · Computer Science 2026-02-19 Aryan Esmailpour , Stavros Sintos

The problem of constrained clustering has attracted significant attention in the past decades. In this paper, we study the balanced $k$-center, $k$-median, and $k$-means clustering problems where the size of each cluster is constrained by…

Computational Geometry · Computer Science 2018-09-11 Hu Ding

The K-Means clustering using LLoyd's algorithm is an iterative approach to partition the given dataset into K different clusters. The algorithm assigns each point to the cluster based on the following objective function \[\ \min…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-05-21 Ashish Srivastava , Mohammed Nawfal

Graph-based clustering has shown promising performance in many tasks. A key step of graph-based approach is the similarity graph construction. In general, learning graph in kernel space can enhance clustering accuracy due to the…

Machine Learning · Computer Science 2019-05-22 Zhao Kang , Honghui Xu , Boyu Wang , Hongyuan Zhu , Zenglin Xu

Crowdsourced, or human computation based clustering algorithms usually rely on relative distance comparisons, as these are easier to elicit from human workers than absolute distance information. A relative distance comparison is a statement…

Data Structures and Algorithms · Computer Science 2017-09-26 Antti Ukkonen

In this work we propose a simple and easily parallelizable algorithm for multiway graph partitioning. The algorithm alternates between three basic components: diffusing seed vertices over the graph, thresholding the diffused seeds, and then…

Machine Learning · Statistics 2014-06-17 Xavier Bresson , Huiyi Hu , Thomas Laurent , Arthur Szlam , James von Brecht