Related papers: Computing Runs on a General Alphabet

In this paper, we consider two versions of the Text Assembling problem. We are given a sequence of strings $s^1,\dots,s^n$ of total length $L$ that is a dictionary, and a string $t$ of length $m$ that is texts. The first version of the…

The $k$-mappability problem has two integers parameters $m$ and $k$. For every subword of size $m$ in a text $S$, we wish to report the number of indices in $S$ in which the word occurs with at most $k$ mismatches. The problem was lately…

We give the first algorithm for adaptive alphabetic prefix-free coding that is worst-case optimal in terms of time and compression when $\sigma \in o \left( \frac{n^{1 / 2}}{\log n} \right)$, where $\sigma$ is the size of the alphabet and…

In a recent article by Chapuy and Perarnau, it was shown that a uniformly chosen automaton on $n$ states with a $2$-letter alphabet has a synchronizing word of length $O(\sqrt{n}\log n)$ with high probability. In this note, we improve this…

We bound the smoothed running time of the FLIP algorithm for local Max-Cut as a function of $\alpha$, the arboricity of the input graph. We show that, with high probability and in expectation, the following holds (where $n$ is the number of…

In this paper we present algorithms for several string problems in the Congested Clique model. In the Congested Clique model, $n$ nodes (computers) are used to solve some problem. The input to the problem is distributed among the nodes, and…

We study the classic problem of scheduling $n$ precedence constrained unit-size jobs on $m = O(1)$ machines so as to minimize the makespan. In a recent breakthrough, Levey and Rothvoss \cite{LR16} developed a $(1+\epsilon)$-approximation…

In this paper we consider word equations with one variable (and arbitrary many appearances of it). A recent technique of recompression, which is applicable to general word equations, is shown to be suitable also in this case. While in…

A string $S[1,n]$ is a power (or tandem repeat) of order $k$ and period $n/k$ if it can decomposed into $k$ consecutive equal-length blocks of letters. Powers and periods are fundamental to string processing, and algorithms for their…

This paper studies the problem of enumerating all maximal collinear subsets of size at least three in a given set of $n$ points. An algorithm for this problem, besides solving degeneracy testing and the exact fitting problem, can also help…

The work takes another look at the number of runs that a string might contain and provides an alternative proof for the bound. We also propose another stronger conjecture that states that, for a fixed order on the alphabet, within every…

In this paper we initiate the study of computing a maximal (not necessarily maximum) repeating pattern in a single input string, where the corresponding problems have been studied (e.g., a maximal common subsequence) only in two or more…

We consider the NP-hard problem of finding a spanning tree with a maximum number of internal vertices. This problem is a generalization of the famous Hamiltonian Path problem. Our dynamic-programming algorithms for general and…

String matching is the problem of finding all the occurrences of a pattern in a text. We propose improved versions of the fast family of string matching algorithms based on hashing $q$-grams. The improvement consists of considering minimal…

We first describe three algorithms for computing the Lyndon array that have been suggested in the literature, but for which no structured exposition has been given. Two of these algorithms execute in quadratic time in the worst case, the…

Race logic, an arrival-time-coded logic family, has demonstrated energy and performance improvements for applications ranging from dynamic programming to machine learning. However, the ad hoc mappings of algorithms into hardware result in…

We study the complexity of a fundamental algorithm for fairly allocating indivisible items, the round-robin algorithm. For $n$ agents and $m$ items, we show that the algorithm can be implemented in time $O(nm\log(m/n))$ in the worst case.…

Several biological problems require the identification of regions in a sequence where some feature occurs within a target density range: examples including the location of GC-rich regions, identification of CpG islands, and sequence…

Read-only memory model is a classical model of computation to study time-space tradeoffs of algorithms. One of the classical results on the ROM model is that any sorting algorithm that uses O(s) words of extra space requires $\Omega…

Datalog is a powerful yet elegant language that allows expressing recursive computation. Although Datalog evaluation has been extensively studied in the literature, so far, only loose upper bounds are known on how fast a Datalog program can…