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A model of an organism as an autonomous intelligent system has been proposed. This model was used to analyze learning of an organism in various environmental conditions. Processes of learning were divided into two types: strong and weak…

Artificial Intelligence · Computer Science 2007-05-23 Alexey V. Melkikh

Laboratory models are often used to understand the interaction of related pathogens via host immunity. For example, recent experiments where ferrets were exposed to two influenza strains within a short period of time have shown how the…

Populations and Evolution · Quantitative Biology 2018-06-06 Ada W. C. Yan , Sophie G. Zaloumis , Julie A. Simpson , James M. McCaw

Crisis response requires information intensive efforts utilized for reducing uncertainty, calculating and comparing costs and benefits, and managing resources in a fashion beyond those regularly available to handle routine problems. This…

Multiagent Systems · Computer Science 2010-04-23 Khaled M. Khalil , M. Abdel-Aziz , Taymour T. Nazmy , Abdel-Badeeh M. Salem

Associative network models featuring multi-tasking properties have been introduced recently and studied in the low load regime, where the number $P$ of simultaneously retrievable patterns scales with the number $N$ of nodes as $P\sim \log…

Disordered Systems and Neural Networks · Physics 2013-03-01 Elena Agliari , Alessia Annibale , Adriano Barra , A. C. C. Coolen , Daniele Tantari

The immune response to a pathogen has two basic features. The first is the expansion of a few pathogen-specific cells to form a population large enough to control the pathogen. The second is the process of differentiation of cells from an…

Populations and Evolution · Quantitative Biology 2014-02-04 Sean P Stromberg , Rustom Antia , Ilya Nemenman

We study some simple mathematical models designed to test the following hypothesis: can a pathogen escape the immune system only because of its high probability of mutation? We propose both spatial and non-spatial models. In all of our…

Probability · Mathematics 2007-05-23 Rinaldo Schinazi , Jason Schweinsberg

Cytology is essential for cancer diagnostics and screening due to its minimally invasive nature. However, the development of robust deep learning models for digital cytology is challenging due to the heterogeneity in staining and…

Computer Vision and Pattern Recognition · Computer Science 2025-04-21 Vedrana Ivezić , Ashwath Radhachandran , Ekaterina Redekop , Shreeram Athreya , Dongwoo Lee , Vivek Sant , Corey Arnold , William Speier

In this article a generalized mathematical model describing the interactions between malignant tumour and immune system with discrete time delay incorporated into the system is considered. Time delay represents the time required to generate…

Tissues and Organs · Quantitative Biology 2015-11-05 Monika Joanna Piotrowska

This paper presents a mathematical model for tumour-immune response interactions in the perspective of immunotherapy by immune checkpoint inhibitors ICIs. The model is of the nonlocal integro-differential Lotka-Volterra type, in which…

Analysis of PDEs · Mathematics 2023-09-01 Zineb Kaid , Camille Pouchol , Jean Clairambault

The epidemic spreading on arbitrary complex networks is studied in SIR (Susceptible Infected Recovered) compartment model. We propose our implementation of a Naive SIR algorithm for epidemic simulation spreading on networks that uses data…

Data Structures and Algorithms · Computer Science 2015-03-20 Nino Antulov-Fantulin , Alen Lancic , Hrvoje Stefancic , Mile Sikic

Modern video games are complex, non-deterministic systems that are difficult to test automatically at scale. Although prior work shows that personality-driven Large Language Model (LLM) agents can improve behavioural diversity and test…

Software Engineering · Computer Science 2026-04-10 Yifei Chen , Sarra Habchi , Lili Wei

Understanding the dynamics of antibody levels is crucial for characterizing the time-dependent response to immune events: either infections or vaccinations. The sequence and timing of these events significantly influence antibody level…

We propose a simple dynamic model of cancer development that captures carcinogenesis and subsequent cancer progression. A central idea of the model is to include the immune system as an extinction threshold, similar to the strong Allee…

Quantitative Methods · Quantitative Biology 2025-06-09 Frank Bastian , Hassan Alkhayuon , Kieran Mulchrone , Micheal O'Riordain , Sebastian Wieczorek

T-cells play a key role in adaptive immunity by mounting specific responses against diverse pathogens. An effective binding between T-cell receptors (TCRs) and pathogen-derived peptides presented on Major Histocompatibility Complexes (MHCs)…

Quantitative Methods · Quantitative Biology 2025-09-05 Gian Marco Visani , Michael N. Pun , Anastasia A. Minervina , Philip Bradley , Paul Thomas , Armita Nourmohammad

Colorectal cancer (CRC) is the third most commonly diagnosed cancer worldwide and the leading cause of cancer-related deaths in adults under 55, involving a complex interplay of biological processes such as dendritic cell (DC) maturation…

Quantitative Methods · Quantitative Biology 2026-05-19 Georgio Hawi , Peter S. Kim , Peter P. Lee

Building models of natural language processing (NLP) is challenging in low-resource scenarios where only limited data are available. Optimization-based meta-learning algorithms achieve promising results in low-resource scenarios by adapting…

Computation and Language · Computer Science 2022-07-15 Yingxiu Zhao , Zhiliang Tian , Huaxiu Yao , Yinhe Zheng , Dongkyu Lee , Yiping Song , Jian Sun , Nevin L. Zhang

Real-world artificial intelligence (AI) systems are increasingly required to operate autonomously in dynamic, uncertain, and continuously changing environments. However, most existing AI models rely on predefined objectives, static training…

Artificial Intelligence · Computer Science 2025-11-04 Hong Su

Group sequential designs (GSDs) are well established and the most commonly used adaptive design in confirmatory clinical trials with interim analyses. However, they remain underutilised, and their implementation involves unique theoretical…

Methodology · Statistics 2025-09-09 Zhangyi He , Suzie Cro , Laurent Billot

Clinical studies have indicated that in malignant surveillances fluctuations in the population of certain effector T-cell repertoire become suppressed. Motivated by such observations and in an attempt to quantify adaptive human response to…

Molecular Networks · Quantitative Biology 2015-05-19 Susmita Roy , Biman Bagchi

Predicting clinical outcome is remarkably important but challenging. Research efforts have been paid on seeking significant biomarkers associated with the therapy response or/and patient survival. However, these biomarkers are generally…

Machine Learning · Computer Science 2020-10-09 Jiancheng Yang , Jiajun Chen , Kaiming Kuang , Tiancheng Lin , Junjun He , Bingbing Ni