Related papers: Fast Computation of Abelian Runs

Given a word $w$ and a Parikh vector $\mathcal{P}$, an abelian run of period $\mathcal{P}$ in $w$ is a maximal occurrence of a substring of $w$ having abelian period $\mathcal{P}$. We give an algorithm that finds all the abelian runs of…

Two strings x and y are said to be Abelian equivalent if x is a permutation of y, or vice versa. If a string z satisfies z = xy with x and y being Abelian equivalent, then z is said to be an Abelian square. If a string w can be factorized…

Constantinescu and Ilie (Bulletin EATCS 89, 167--170, 2006) introduced the notion of an \emph{Abelian period} of a word. A word of length $n$ over an alphabet of size $\sigma$ can have $\Theta(n^{2})$ distinct Abelian periods. The…

We describe a RAM algorithm computing all runs (maximal repetitions) of a given string of length $n$ over a general ordered alphabet in $O(n\log^{\frac{2}3} n)$ time and linear space. Our algorithm outperforms all known solutions working in…

Abelian periodicity of strings has been studied extensively over the last years. In 2006 Constantinescu and Ilie defined the abelian period of a string and several algorithms for the computation of all abelian periods of a string were…

Let $P$ be a set of $m$ points in ${\mathbb R}^2$, let $\Sigma$ be a set of $n$ semi-algebraic sets of constant complexity in ${\mathbb R}^2$, let $(S,+)$ be a semigroup, and let $w: P \rightarrow S$ be a weight function on the points of…

The deviation of the observed frequency of a word $w$ from its expected frequency in a given sequence $x$ is used to determine whether or not the word is avoided. This concept is particularly useful in DNA linguistic analysis. The value of…

The observed frequency of the longest proper prefix, the longest proper suffix, and the longest infix of a word $w$ in a given sequence $x$ can be used for classifying $w$ as avoided or overabundant. The definitions used for the expectation…

In this paper we consider the problem of computing the longest common abelian factor (LCAF) between two given strings. We present a simple $O(\sigma~ n^2)$ time algorithm, where $n$ is the length of the strings and $\sigma$ is the alphabet…

A run in a string is a maximal periodic substring. For example, the string $\texttt{bananatree}$ contains the runs $\texttt{anana} = (\texttt{an})^{3/2}$ and $\texttt{ee} = \texttt{e}^2$. There are less than $n$ runs in any length-$n$…

I present a parallel algorithm for exact probabilistic inference in Bayesian networks. For polytree networks with n variables, the worst-case time complexity is O(log n) on a CREW PRAM (concurrent-read, exclusive-write parallel…

The cornerstone of any algorithm computing all repetitions in a string of length n in O(n) time is the fact that the number of runs (or maximal repetitions) is O(n). We give a simple proof of this result. As a consequence of our approach,…

Let two static sequences of strings $P$ and $S$, representing prefix and suffix conditions respectively, be given as input for preprocessing. For the query, let two positive integers $k_1$ and $k_2$ be given, as well as a string $T$ given…

Let pi_w denote the failure function of the Morris-Pratt algorithm for a word w. In this paper we study the following problem: given an integer array A[1..n], is there a word w over arbitrary alphabet such that A[i]=pi_w[i] for all i?…

The complexity of computing the Lempel-Ziv factorization and the set of all runs (= maximal repetitions) is studied in the decision tree model of computation over ordered alphabet. It is known that both these problems can be solved by RAM…

Let $w$ be a string of length $n$. The problem of counting factors crossing a position - Problem 64 from the textbook ``125 Problems in Text Algorithms'' [Crochemore, Leqroc, and Rytter, 2021], asks to count the number $\mathcal{C}(w,k)$…

The approximate period recovery problem asks to compute all $\textit{approximate word-periods}$ of a given word $S$ of length $n$: all primitive words $P$ ($|P|=p$) which have a periodic extension at edit distance smaller than $\tau_p$ from…

Constantinescu and Ilie (Bulletin of the EATCS 89, 167-170, 2006) introduced the idea of an Abelian period with head and tail of a finite word. An Abelian period is called full if both the head and the tail are empty. We present a simple…

We consider the approximate pattern matching problem under edit distance. In this problem we are given a pattern $P$ of length $w$ and a text $T$ of length $n$ over some alphabet $\Sigma$, and a positive integer $k$. The goal is to find all…

A run is a maximal occurrence of a repetition $v$ with a period $p$ such that $2p \le |v|$. The maximal number of runs in a string of length $n$ was studied by several authors and it is known to be between $0.944 n$ and $1.029 n$. We…