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Next generation architectures necessitate a shift away from traditional workflows in which the simulation state is saved at prescribed frequencies for post-processing analysis. While the need to shift to in~situ workflows has been…

Computational Engineering, Finance, and Science · Computer Science 2015-08-20 Maher Salloum , Janine C. Bennett , Ali Pinar , Ankit Bhagatwala , Jacqueline H. Chen

Real-time data filtering and selection -- or trigger -- systems at high-throughput scientific facilities such as the experiments at the Large Hadron Collider (LHC) must process extremely high-rate data streams under stringent bandwidth,…

Various kinetic Monte Carlo algorithms become inefficient when some of the population sizes in a system are large, which gives rise to a large number of reaction events per unit time. Here, we present a new acceleration algorithm based on…

Quantitative Methods · Quantitative Biology 2019-07-24 Yen Ting Lin , Song Feng , William S. Hlavacek

Scientific discoveries are increasingly constrained by limited storage space and I/O capacities. For time-series simulations and experiments, their data often need to be decimated over timesteps to accommodate storage and I/O limitations.…

The growing complexity and scale of scientific workflows in high performance computing (HPC) environments have led to significant challenges in managing energy consumption without compromising computational performance. Traditional…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-05-25 Ali Zahir , Ashiq Anjum , Mark Wilkinson , Jeyan Thiyagalingam

While analytical solutions of critical (phase) transitions in physical systems are abundant for simple nonlinear systems, such analysis remains intractable for real-life dynamical systems. A key example of such a physical system is…

The complexity of combustion simulations demands the latest high-performance computing tools to accelerate its time-to-solution results. A current trend on HPC systems is the utilization of CPUs with SIMD or vector extensions to exploit…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-10-24 Fabio Banchelli , Guillermo Oyarzun , Marta Garcia-Gasulla , Filippo Mantovani , Ambrus Both , Guillaume Houzeaux , Daniel Mira

Detecting abrupt changes in real-time data streams from scientific simulations presents a challenging task, demanding the deployment of accurate and efficient algorithms. Identifying change points in live data stream involves continuous…

This work introduces a comprehensive approach utilizing data-driven methods to elucidate the deposition process regimes in Chemical Vapor Deposition (CVD) reactors and the interplay of physical mechanism that dominate in each one of them.…

Event detection is the first step in event-based non-intrusive load monitoring (NILM) and it can provide useful transient information to identify appliances. However, existing event detection methods with fixed parameters may fail in case…

Signal Processing · Electrical Eng. & Systems 2021-07-26 Lei Yan , Wei Tian , Jiayu Han , Zuyi Li

Monitoring software systems at runtime is key for understanding workloads, debugging, and self-adaptation. It typically involves collecting and storing observable software data, which can be analyzed online or offline. Despite the…

Software Engineering · Computer Science 2023-05-03 Jhonny Mertz , Ingrid Nunes

Data-intensive science is increasingly reliant on real-time processing capabilities and machine learning workflows, in order to filter and analyze the extreme volumes of data being collected. This is especially true at the energy and…

Artificial Intelligence · Computer Science 2021-04-21 Chinmaya Mahesh , Kristin Dona , David W. Miller , Yuxin Chen

Efficient sampling in biomolecular simulations is critical for accurately capturing the complex dynamical behaviors of biological systems. Adaptive sampling techniques aim to improve efficiency by focusing computational resources on the…

Biomolecules · Quantitative Biology 2024-10-22 Hassan Nadeem , Diwakar Shukla

Molecular dynamics (MD) simulations are useful in obtaining thermodynamic and kinetic properties of bio-molecules but are limited by the timescale barrier, i.e., we may be unable to efficiently obtain properties because we need to run…

Chemical Physics · Physics 2017-08-23 Surl-Hee Ahn , Jay W. Grate , Eric F. Darve

Simulating detector responses is a crucial part of understanding the inner workings of particle collisions in the Large Hadron Collider at CERN. Such simulations are currently performed with statistical Monte Carlo methods, which are…

Computer Vision and Pattern Recognition · Computer Science 2025-08-29 Patryk Będkowski , Jan Dubiński , Filip Szatkowski , Kamil Deja , Przemysław Rokita , Tomasz Trzciński

This paper presents an efficient method based on Evolutionary Center Algorithm (ECA) for accurately and efficiently determining the optimal reaction and diffusion parameters for Chemical-Diffusive Models (CDM) to simulate flame acceleration…

Chemical Physics · Physics 2026-04-23 Huahua Xiao , Xu Zhang , Mingbin Zhao , Congling Shi

A novel extension of a rapid compression machine (RCM), namely a Rapid Compression Expansion Machine (RCEM), is described and its use for studying chemical kinetics is demonstrated. Like conventional RCMs, the RCEM quickly compresses a…

Chemical Physics · Physics 2016-06-21 Marc Werler , Robert Schiessl , Ulrich Maas

The probability distribution describing the state of a Stochastic Reaction Network evolves according to the Chemical Master Equation (CME). It is common to estimated its solution using Monte Carlo methods such as the Stochastic Simulation…

Quantitative Methods · Quantitative Biology 2015-06-18 Benjamin Hepp , Ankit Gupta , Mustafa Khammash

This paper introduces a new platform to accelerate the modeling of complex aerothermochemical interactions in new turbomachines, turbo-reactors, to decarbonise chemical processes. While previous work has aerothermally demonstrated the…

Computational Engineering, Finance, and Science · Computer Science 2025-02-13 Dylan Rubini , Budimir Rosic

Computer simulations are invaluable tools for scientific discovery. However, accurate simulations are often slow to execute, which limits their applicability to extensive parameter exploration, large-scale data analysis, and uncertainty…

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