Related papers: Enhanced Covers of Regular & Indeterminate Strings…
An \emph{indeterminate string} $x = x[1..n]$ on an alphabet $\Sigma$ is a sequence of nonempty subsets of $\Sigma$; $x$ is said to be \emph{regular} if every subset is of size one. A proper substring $u$ of regular $x$ is said to be a…
An \itbf{indeterminate string} (or, more simply, just a \itbf{string}) $\s{x} = \s{x}[1..n]$ on an alphabet $\Sigma$ is a sequence of nonempty subsets of $\Sigma$. We say that $\s{x}[i_1]$ and $\s{x}[i_2]$ \itbf{match} (written $\s{x}[i_1]…
We consider the problem of finding repetitive structures and inherent patterns in a given string $\s{s}$ of length $n$ over a finite totally ordered alphabet. A border $\s{u}$ of a string $\s{s}$ is both a prefix and a suffix of $\s{s}$…
The observed frequency of the longest proper prefix, the longest proper suffix, and the longest infix of a word $w$ in a given sequence $x$ can be used for classifying $w$ as avoided or overabundant. The definitions used for the expectation…
An integer array y = y[1..n] is said to be feasible if and only if y[1] = n and, for every i \in 2..n, i \le i+y[i] \le n+1. A string is said to be indeterminate if and only if at least one of its elements is a subset of cardinality greater…
The paper addresses the problem of defining families of ordered sequences $\{x_i\}_{i\in N}$ of elements of a compact subset $X$ of $R^d$ whose prefixes $X_n=\{x_i\}_{i=1}^{n}$, for all orders $n$, have good space-filling properties as…
We propose a general algorithm of constructing an extended formulation for any given set of linear constraints with integer coefficients. Our algorithm consists of two phases: first construct a decision diagram $(V,E)$ that somehow…
We consider the problem of computing a shortest solid cover of an indeterminate string. An indeterminate string may contain non-solid symbols, each of which specifies a subset of the alphabet that could be present at the corresponding…
A border of a string is a non-empty proper prefix of the string that is also a suffix. A string is unbordered if it has no border. The longest unbordered factor is a fundamental notion in stringology, closely related to string periodicity.…
Covers are a kind of quasiperiodicity in strings. A string $C$ is a cover of another string $T$ if any position of $T$ is inside some occurrence of $C$ in $T$. The shortest and longest cover arrays of $T$ have the lengths of the shortest…
Indeterminate strings have received considerable attention in the recent past; see for example Christodoulakis et al 2015 and Helling et al 2017. This attention is due to their applicability in bioinformatics, and to the natural…
The problem of string reconstruction from substring information has found many applications due to its relevance in DNA- and polymer-based data storage. One practically important and challenging paradigm requires reconstructing mixtures of…
The problem of reconstructing strings from substring information has found many applications due to its importance in genomic data sequencing and DNA- and polymer-based data storage. One practically important and challenging paradigm…
We study the fundamental question of how efficiently suffix array entries can be accessed when the array cannot be stored explicitly. The suffix array $SA_T[1..n]$ of a text $T$ of length $n$ encodes the lexicographic order of its suffixes…
There is a large literature devoted to the problem of finding an optimal (min-cost) prefix-free code with an unequal letter-cost encoding alphabet of size. While there is no known polynomial time algorithm for solving it optimally there are…
Recently, prefix-tuning has gained increasing attention as a parameter-efficient finetuning method for large-scale pretrained language models. The method keeps the pretrained models fixed and only updates the prefix token parameters for…
Most of the attention in statistical compression is given to the space used by the compressed sequence, a problem completely solved with optimal prefix codes. However, in many applications, the storage space used to represent the prefix…
Covers being one of the most popular form of regularities in strings, have drawn much attention over time. In this paper, we focus on the problem of linear time inference of strings from cover arrays using the least sized alphabet possible.…
This work shows several direct and recursive constructions of ordered covering arrays using projection, fusion, column augmentation, derivation, concatenation and cartesian product. Upper bounds on covering codes in NRT spaces are also…
We present a new recursive generation algorithm for prefix normal words. These are binary strings with the property that no substring has more 1s than the prefix of the same length. The new algorithm uses two operations on binary strings,…