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We present an efficient algorithm for a problem in the interface between clustering and graph embeddings. An embedding $\varphi:G\rightarrow M$ of a graph $G$ into a 2-manifold $M$ maps the vertices in $V(G)$ to distinct points and the…

Computational Geometry · Computer Science 2019-07-24 Hugo A. Akitaya , Radoslav Fulek , Csaba D. Tóth

Two graphs $G_1=(V,E_1)$ and $G_2=(V,E_2)$ admit a geometric simultaneous embedding if there exists a set of points P and a bijection M: P -> V that induce planar straight-line embeddings both for $G_1$ and for $G_2$. While it is known that…

Computational Geometry · Computer Science 2010-01-05 Patrizio Angelini , Markus Geyer , Michael Kaufmann , Daniel Neuwirth

We study the complexity of two problems in simultaneous graph drawing. The first problem, GRacSim Drawing, asks for finding a simultaneous geometric embedding of two graphs such that only crossings at right angles are allowed. The second…

Computational Geometry · Computer Science 2016-11-15 Luca Grilli

Typical graph embeddings may not capture type-specific bipartite graph features that arise in such areas as recommender systems, data visualization, and drug discovery. Machine learning methods utilized in these applications would be better…

Machine Learning · Computer Science 2020-07-24 Justin Sybrandt , Ilya Safro

Given an undirected, edge-weighted graph G together with pairs of vertices, called pairs of terminals, the minimum multicut problem asks for a minimum-weight set of edges such that, after deleting these edges, the two terminals of each pair…

Data Structures and Algorithms · Computer Science 2016-11-24 Éric Colin de Verdière

In this paper, we define and study the new problem Simultaneous PQ-Ordering. Its input consists of a set of PQ-trees, which represent sets of circular orders of their leaves, together with a set of child-parent relations between these…

Data Structures and Algorithms · Computer Science 2011-12-02 Thomas Bläsius , Ignaz Rutter

In a confluence of combinatorics and geometry, simultaneous representations provide a way to realize combinatorial objects that share common structure. A standard case in the study of simultaneous representations is the sunflower case where…

Data Structures and Algorithms · Computer Science 2019-08-26 Ignaz Rutter , Darren Strash , Peter Stumpf , Michael Vollmer

Visual rendering of graphs is a key task in the mapping of complex network data. Although most graph drawing algorithms emphasize aesthetic appeal, certain applications such as travel-time maps place more importance on visualization of…

Machine Learning · Statistics 2014-01-20 Brian Baingana , Georgios B. Giannakis

In this paper, we give polynomial-time algorithms that can take a graph G with a given combinatorial embedding on an orientable surface S of genus g and produce a planar drawing of G in R^2, with a bounding face defined by a polygonal…

Computational Geometry · Computer Science 2009-08-13 Christian A. Duncan , Michael T. Goodrich , Stephen G. Kobourov

New algorithms for embedding graphs have reduced the asymptotic complexity of finding low-dimensional representations. One-Hot Graph Encoder Embedding (GEE) uses a single, linear pass over edges and produces an embedding that converges…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-02-08 Ariel Lubonja , Cencheng Shen , Carey Priebe , Randal Burns

We consider the problem of simultaneous embedding of planar graphs. There are two variants of this problem, one in which the mapping between the vertices of the two graphs is given and another where the mapping is not given. In particular,…

Computational Geometry · Computer Science 2007-05-23 C. A. Duncan , A. Efrat , C. Erten , S. Kobourov , J. S. B. Mitchell

Graph embedding aims at learning a vector-based representation of vertices that incorporates the structure of the graph. This representation then enables inference of graph properties. Existing graph embedding techniques, however, do not…

A directed graph $G$ is upward planar if it admits a planar embedding such that each edge is $y$-monotone. Unlike planarity testing, upward planarity testing is NP-hard except in restricted cases, such as when the graph has the…

Data Structures and Algorithms · Computer Science 2022-09-29 Ivor van der Hoog , Irene Parada , Eva Rotenberg

We investigate the problem of constructing planar drawings with few bends for two related problems, the partially embedded graph problem---to extend a straight-line planar drawing of a subgraph to a planar drawing of the whole graph---and…

Computational Geometry · Computer Science 2014-10-31 Timothy M. Chan , Fabrizio Frati , Carsten Gutwenger , Anna Lubiw , Petra Mutzel , Marcus Schaefer

In the Partially Embedded Planarity problem, we are given a graph $G$ together with a topological drawing of a subgraph $H$ of $G$. The task is to decide whether the drawing can be extended to a drawing of the whole graph such that no two…

Computational Geometry · Computer Science 2024-10-18 Simon D. Fink , Ignaz Rutter , Sandhya T. P

We consider three variants of the problem of finding a maximum weight restricted $2$-matching in a subcubic graph $G$. (A $2$-matching is any subset of the edges such that each vertex is incident to at most two of its edges.) Depending on…

Data Structures and Algorithms · Computer Science 2021-01-01 Katarzyna Paluch , Mateusz Wasylkiewicz

We introduce the Graph Sylvester Embedding (GSE), an unsupervised graph representation of local similarity, connectivity, and global structure. GSE uses the solution of the Sylvester equation to capture both network structure and…

Machine Learning · Computer Science 2022-05-10 Shay Deutsch , Stefano Soatto

Planar Embedding is a drawing of a graph on the plane such that the edges do not intersect each other except at the vertices. We know that testing the planarity of a graph and computing its embedding (if it exists), can efficiently be…

Data Structures and Algorithms · Computer Science 2023-07-19 Samir Datta , Asif Khan , Anish Mukherjee

We study the problem of determining whether a given graph~$G=(V,E)$ admits a matching~$M$ whose removal destroys all odd cycles of~$G$ (or equivalently whether~$G-M$ is bipartite). This problem is equivalent to determine whether~$G$ admits…

Discrete Mathematics · Computer Science 2019-06-12 Carlos V. G. C. Lima , Dieter Rautenbach , Uéverton S. Souza , Jayme L. Szwarcfiter

We study the simultaneous embeddability of a pair of partitions of the same underlying set into disjoint blocks. Each element of the set is mapped to a point in the plane and each block of either of the two partitions is mapped to a region…

Computational Geometry · Computer Science 2014-08-27 Jan Christoph Athenstädt , Tanja Hartmann , Martin Nöllenburg