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In a signed graph $G$, an induced subgraph is called a negative clique if it is a complete graph and all of its edges are negative. In this paper, we give the characteristic polynomials and the eigenvalues of some signed graphs having…

Discrete Mathematics · Computer Science 2018-06-01 Ranveer Singh , Ravindra B. Bapat

Complex networks are universal, arising in fields as disparate as sociology, physics, and biology. In the past decade, extensive research into the properties and behaviors of complex systems has uncovered surprising commonalities among the…

Other Quantitative Biology · Quantitative Biology 2015-06-26 Claire Christensen , Reka Albert

In a paired threshold graph, each vertex has a weight, and two vertices are adjacent if their weight sum is large enough and their weight difference is small enough. It generalizes threshold graphs and unit interval graphs, both very well…

Data Structures and Algorithms · Computer Science 2019-10-01 Guozhen Rong , Yixin Cao , Jianxin Wang

In graph analyses, directed edges are often approximated to undirected ones so that the adjacency matrices may be symmetric. However, such simplification has not been thoroughly verified. In this study, we investigate how directedness…

Physics and Society · Physics 2022-08-19 Masaki Ochi , Tatsuro Kawamoto

The extended adjacency matrix of a graph with $n$ vertices is a real symmetric matrix of order $n\times n$ whose $(i,j)$-th entry is the average of the ratio of the degree of the vertex $i$ to that of the vertex $j$ and its reciprocal when…

Combinatorics · Mathematics 2025-01-22 Abujafar Mandal , Sk. Md. Abu Nayeem

We develop the Lie theory of Lie-admissible algebras whose product is enriched with higher operations modeled on directed graphs with a view to apply it to the deformation theories controlled by this kind of Lie algebras. We produce…

Quantum Algebra · Mathematics 2025-10-10 Ricardo Campos , Bruno Vallette

We study the spectrum of the join of several circulant matrices. We apply our results to compute explicitly the spectrum of certain graphs obtained by joining several circulant graphs.

Combinatorics · Mathematics 2022-06-13 Jacqueline Doan , Jan Minac , Lyle Muller , Tung T. Nguyen , Federico W. Pasini

Directed mixed graphs permit directed and bidirected edges between any two vertices. They were first considered in the path analysis developed by Sewall Wright and play an essential role in statistical modeling. We introduce a matrix…

Statistics Theory · Mathematics 2024-07-23 Qingyuan Zhao

Graphs are ubiquitous in encoding relational information of real-world objects in many domains. Graph generation, whose purpose is to generate new graphs from a distribution similar to the observed graphs, has received increasing attention…

Machine Learning · Computer Science 2022-12-08 Yanqiao Zhu , Yuanqi Du , Yinkai Wang , Yichen Xu , Jieyu Zhang , Qiang Liu , Shu Wu

The task of data integration for multi-omics data has emerged as a powerful strategy to unravel the complex biological underpinnings of cancer. Recent advancements in graph neural networks (GNNs) offer an effective framework to model…

Machine Learning · Computer Science 2025-06-24 Payam Zohari , Mostafa Haghir Chehreghani

Formation mechanisms are fundamental to the study of complex networks, but learning them from observations is challenging. In real-world domains, one often has access only to the final constructed graph, instead of the full construction…

Machine Learning · Computer Science 2020-07-08 Rakshit Trivedi , Jiachen Yang , Hongyuan Zha

Across the sciences, the statistical analysis of networks is central to the production of knowledge on relational phenomena. Because of their ability to model the structural generation of networks, exponential random graph models are a…

Data Analysis, Statistics and Probability · Physics 2015-05-27 Bruce A. Desmarais , Skyler J. Cranmer

A long standing open problem in extremal graph theory is to describe all graphs that maximize the number of induced copies of a path on four vertices. The character of the problem changes in the setting of oriented graphs, and becomes more…

Combinatorics · Mathematics 2020-06-12 Ilkyoo Choi , Bernard Lidický , Florian Pfender

We study a general class of recurrence relations that appear in the application of a matrix diagonalization procedure. We find general closed formula and determine analytical properties of the solutions. We finally apply these findings in…

Combinatorics · Mathematics 2025-07-02 Elismar R. Oliveira , Vilmar Trevisan

A graph is an opposition graph, respectively, a coalition graph, if it admits an acyclic orientation which puts the two end-edges of every chordless 4-vertex path in opposition, respectively, in the same direction. Opposition and coalition…

Discrete Mathematics · Computer Science 2015-07-03 Van Bang Le , Thomas Podelleck

Arrangement graphs were introduced for their connection to computational networks and have since generated considerable interest in the literature. In a pair of recent articles by Chen, Ghorbani and Wong, the eigenvalues for the adjacency…

Representation Theory · Mathematics 2017-08-16 José Araujo , Tim Bratten

Many popular variants of graph neural networks (GNNs) that are capable of handling multi-relational graphs may suffer from vanishing gradients. In this work, we propose a novel GNN architecture based on the Gated Graph Neural Network with…

Machine Learning · Computer Science 2020-07-21 Denis Lukovnikov , Jens Lehmann , Asja Fischer

We extend the concept of graph energy, introduced by Gutman, to matrices. We give upper and lower bounds on matrix energy extending previous results for graphs. In particular, we estimate the energy of almost all graphs.

Commutative Algebra · Mathematics 2007-05-23 Vladimir Nikiforov

We introduce the framework of continuous--depth graph neural networks (GNNs). Graph neural ordinary differential equations (GDEs) are formalized as the counterpart to GNNs where the input-output relationship is determined by a continuum of…

Machine Learning · Computer Science 2021-06-23 Michael Poli , Stefano Massaroli , Junyoung Park , Atsushi Yamashita , Hajime Asama , Jinkyoo Park

We expand on some invariants used for classifying nonselfadjoint operator algebras. Specifically to nonselfadjoint operator algebras which have a conditional expectation onto a commutative diagonal we construct an edge-colored directed…

Operator Algebras · Mathematics 2013-07-23 Benton Duncan
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