Related papers: Linear Algorithm for Conservative Degenerate Patte…
We study permutation (jumbled/Abelian) pattern matching over a general alphabet $\Sigma$. Given a pattern P of length m and a text T of length n, the classical task is to decide whether T contains a length-m substring whose Parikh vector…
Suppose an oracle knows a string $S$ that is unknown to us and that we want to determine. The oracle can answer queries of the form "Is $s$ a substring of $S$?". In 1995, Skiena and Sundaram showed that, in the worst case, any algorithm…
We consider the problem of counting all $k$-vertex subgraphs in an input graph, for any constant $k$. This problem (denoted sub-cnt$_k$) has been studied extensively in both theory and practice. In a classic result, Chiba and Nishizeki…
We consider relativistic and non-relativistic particles and strings in spaces (or space-times) with a degenerate metric. We show that the resulting dynamics is described by a rich structure of constraints. All constraints are classified and…
The purpose of this note is to clarify the conditions under which the first-order generalize-harmonic representation of the vacuum Einstein evolution system is linearly degenerate.
We present simple and efficient algorithms for calculating $q$-gram frequencies on strings represented in compressed form, namely, as a straight line program (SLP). Given an SLP of size $n$ that represents string $T$, we present an $O(qn)$…
A graph is $k$-degenerate if every subgraph $H$ has a vertex $v$ with $d_{H}(v) \leq k$. The class of degenerate graphs plays an important role in the graph coloring theory. Observed that every $k$-degenerate graph is $(k + 1)$-choosable…
In this letter, we consider a problem of reconstructing an unknown discrete signal taking values in a finite alphabet from incomplete linear measurements. The difficulty of this problem is that the computational complexity of the…
A {\it superpattern} is a string of characters of length $n$ that contains as a subsequence, and in a sense that depends on the context, all the smaller strings of length $k$ in a certain class. We prove structural and probabilistic results…
In this paper, we present fixed-parameter tractability algorithms for both the undirected and directed versions of the Spanning Tree Isomorphism Problem, parameterized by the size $k$ of a redundant set. A redundant set is a collection of…
Counting small patterns in a large dataset is a fundamental algorithmic task. The most common version of this task is subgraph/homomorphism counting, wherein we count the number of occurrences of a small pattern graph $H$ in an input graph…
This study develops an algorithm to solve a variation of the Shortest Common Superstring (SCS) problem. There are two modifications to the base SCS problem. First, one string in the set S is allowed to have up to K mistakes, defined as not…
Many algorithms have been developed for NP-hard problems on graphs with small treewidth $k$. For example, all problems that are expressable in linear extended monadic second order can be solved in linear time on graphs of bounded treewidth.…
We give a spectral algorithm for decomposing overcomplete order-4 tensors, so long as their components satisfy an algebraic non-degeneracy condition that holds for nearly all (all but an algebraic set of measure $0$) tensors over…
Given a text and a pattern over two types of symbols called constants and variables, the parameterized pattern matching problem is to find all occurrences of substrings of the text that the pattern matches by substituting a variable in the…
Described are two algorithms to find long approximate palindromes in a string, for example a DNA sequence. A simple algorithm requires O(n)-space and almost always runs in $O(k.n)$-time where n is the length of the string and k is the…
Given a string $s$ of length $n$ over a general alphabet and an integer $k$, the problem is to decide whether $s$ is a concatenation of $k$ nonempty palindromes. Two previously known solutions for this problem work in time $O(kn)$ and…
String data are often disseminated to support applications such as location-based service provision or DNA sequence analysis. This dissemination, however, may expose sensitive patterns that model confidential knowledge. In this paper, we…
Symbolic regression is a powerful system identification technique in industrial scenarios where no prior knowledge on model structure is available. Such scenarios often require specific model properties such as interpretability, robustness,…
An undirected graph G is d-degenerate if every subgraph of G has a vertex of degree at most d. By the classical theorem of Erd\H{o}s and Gallai from 1959, every graph of degeneracy d>1 contains a cycle of length at least d+1. The proof of…