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A coarse-grained computational procedure based on the Finite Element Method is proposed to calculate the normal modes and mechanical response of proteins and their supramolecular assemblies. Motivated by the elastic network model, proteins…

Biomolecules · Quantitative Biology 2007-05-23 Mark Bathe

In this work, two fast multipole boundary element formulations for the linear time-harmonic acoustic analysis of finite periodic structures are presented. Finite periodic structures consist of a bounded number of unit cell replications in…

Numerical Analysis · Mathematics 2022-01-31 Christopher Jelich , Wenchang Zhao , Haibo Chen , Steffen Marburg

Many applications like subseismic fault modeling, fractured reservoir modeling and interpretation/validation of fault connectivity involve the solution to an elliptic boundary value problem in a background medium perturbed by the presence…

Optimization and Control · Mathematics 2025-01-10 Trung Hau Hoang

The paper is concerned with the development of efficient and accurate solution procedures for the isogeometric boundary element method (BEM) when applied to problems that contain inclusions that have elastic properties different to the…

Numerical Analysis · Mathematics 2020-10-28 Gernot Beer , Eugenio Ruocco , Christian Duenser , Vincenzo Mallardo

The non-linear collision-induced breakage equation has significant applications in particulate processes. Two semi-analytical techniques, namely homotopy analysis method (HAM) and accelerated homotopy perturbation method (AHPM) are…

Numerical Analysis · Mathematics 2024-03-14 Sanjiv Kumar Bariwal , Saddam Hussain , Rajesh Kumar

A finite element methodology for large classes of variational boundary value problems is defined which involves discretizing two linear operators: (1) the differential operator defining the spatial boundary value problem; and (2) a Riesz…

Numerical Analysis · Mathematics 2017-12-08 Brendan Keith , Socratis Petrides , Federico Fuentes , Leszek Demkowicz

This paper presents a new parameter free partially penalized immersed finite element method and convergence analysis for solving second order elliptic interface problems. A lifting operator is introduced on interface edges to ensure the…

Numerical Analysis · Mathematics 2022-02-23 Haifeng Ji , Feng Wang , Jinru Chen , Zhilin Li

The Finite Element Method (FEM) is the gold standard for spatial discretization in numerical simulations for a wide spectrum of real-world engineering problems. Prototypical areas of interest include linear heat transfer and linear…

Numerical Analysis · Mathematics 2022-01-10 Marcelo Forets , Daniel Freire Caporale , Jorge M. Pérez Zerpa

Polygonal finite elements generally do not pass the patch test as a result of quadrature error in the evaluation of weak form integrals. In this work, we examine the consequences of lack of polynomial consistency and show that it can lead…

Numerical Analysis · Mathematics 2013-07-18 Cameron Talischi , Glaucio H. Paulino

This paper studies the numerical analysis of a parameter identification problem governed by elliptic equations with power-type nonlinearity. We propose a numerical reconstruction via a suitable least-squares minimization problem based on…

Numerical Analysis · Mathematics 2026-03-10 De-Han Chen , Yi-Hsuan Lin , Irwin Yousept

The superelastic constitutive model implemented in the commercial finite element code ABAQUS is verified using the method of exact solutions (MES). An analytical solution for uniaxial strain is first developed under a set of simplifying…

Computational Engineering, Finance, and Science · Computer Science 2023-05-31 Kenneth I. Aycock , Nuno Rebelo , Brent A. Craven

Importance sampling (IS) and numerical integration methods are usually employed for approximating moments of complicated target distributions. In its basic procedure, the IS methodology randomly draws samples from a proposal distribution…

Computation · Statistics 2022-04-12 Víctor Elvira , Luca Martino , Pau Closas

In this contribution we present a new computational method for coupled bulk-surface problems on time-dependent domains. The method is based on a space-time formulation using discontinuous piecewise linear elements in time and continuous…

Numerical Analysis · Mathematics 2016-05-25 Peter Hansbo , Mats G. Larson , Sara Zahedi

Composite function minimization captures a wide spectrum of applications in both computer vision and machine learning. It includes bound constrained optimization and cardinality regularized optimization as special cases. This paper proposes…

Optimization and Control · Mathematics 2016-12-08 Ganzhao Yuan , Wei-Shi Zheng , Bernard Ghanem

The finite element method is used to approximately solve boundary value problems for differential equations. The method discretises the parameter space and finds an approximate solution by solving a large system of linear equations. Here we…

Quantum Physics · Physics 2016-03-23 Ashley Montanaro , Sam Pallister

We consider an elliptic partial differential equation in non-divergence form with a random diffusion matrix and random forcing term. To address this, we propose a mixed-type continuous finite element discretization in the physical domain,…

Numerical Analysis · Mathematics 2025-12-04 Amireh Mousavi

Cracking Elements Method (CEM) is a numerical tool to simulate quasi-brittle fractures, which does not need remeshing, nodal enrichment, or complicated crack tracking strategy. The cracking elements used in the CEM can be considered as a…

Computational Engineering, Finance, and Science · Computer Science 2024-07-25 Xueya Wang , Yiming Zhang , Minjie Wen , Herbert Mang

The Finite Element Method (FEM) is a powerful computational tool for solving partial differential equations (PDEs). Although commercial and open-source FEM software packages are widely available, an independent implementation of FEM…

Numerical Analysis · Mathematics 2025-02-06 Victor Dominguez , Alejandro Duque

Mixture - modeling of mass spectra is an approach with many potential applications including peak detection and quantification, smoothing, de-noising, feature extraction and spectral signal compression. However, existing algorithms do not…

Computation · Statistics 2015-08-04 Andrzej Polanski , Michal Marczyk , Monika Pietrowska , Piotr Widlak , Joanna Polanska

The estimation of the density matrix of a $k$-level quantum system is studied when the parametrization is given by the real and imaginary part of the entries and they are estimated by independent measurements. It is established that the…

Quantum Physics · Physics 2009-11-13 D. Petz , K. M. Hangos , A. Magyar