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This paper (parts I and II) provides an expository introduction to monotone and near-monotone dynamical systems associated to biochemical networks, those whose graphs are consistent or near-consistent. Many conclusions can be drawn from…

Molecular Networks · Quantitative Biology 2007-05-23 Eduardo D. Sontag

Brain function and connectivity is a pressing mystery in medicine related to many diseases. Neural connectomes have been studied as graphs with graph theory methods including topological methods. Work has started on hypergraph models and…

Methodology · Statistics 2022-05-09 Michael G. Rawson

Moment systems arise in a wide range of contexts and applications, e.g. in network modeling of complex systems. Since moment systems consist of a high or even infinite number of coupled equations, an indispensable step in obtaining a…

Adaptation and Self-Organizing Systems · Physics 2024-03-19 Christian Kuehn , Jan Mölter

We develop the theory of residuated lattices by introducing and studying several new types of filters and related concepts, including semi-simple filters, essential filters, the socle of a filter, and independent families of filters. Our…

Logic · Mathematics 2025-11-18 Esmaeil Rostami

The study of hypergraphs has received a lot of attention over the past few years, however up until recently there has been no interest in systems where higher order interactions are not undirected. In this article we introduce the notion of…

Mathematical Physics · Physics 2024-08-28 Gonzalo Contreras-Aso , Regino Criado , Miguel Romance

Recently, there has been a rising surge of momentum for deep representation learning in hyperbolic spaces due to theirhigh capacity of modeling data like knowledge graphs or synonym hierarchies, possessing hierarchical structure. We refer…

Machine Learning · Computer Science 2021-02-18 Wei Peng , Tuomas Varanka , Abdelrahman Mostafa , Henglin Shi , Guoying Zhao

Let G be a group which is hyperbolic relative to a collection of subgroups A, and it is also hyperbolic relative to a collection of subgroups B. Suppose that the collection A contains B. We characterize, for subgroups of G, when…

Group Theory · Mathematics 2011-05-03 Eduardo Martinez-Pedroza

Functions correspond to one of the key concepts in mathematics and science, allowing the representation and modeling of several types of signals and systems. The present work develops an approach for characterizing the coverage and…

Discrete Mathematics · Computer Science 2021-02-08 Luciano da F. Costa

In the framework of coupled cell systems, a coupled cell network describes graphically the dynamical dependencies between individual dynamical systems, the cells. The fundamental network of a network reveals the hidden symmetries of that…

Combinatorics · Mathematics 2017-12-06 Manuela A D Aguiar , Ana P S Dias , Pedro Soares

We introduce the (general) homotopy groups of spheres as link invariants for Brunnian-type links through the investigations on the intersection subgroup of the normal closures of the meridians of strongly nonsplittable links. The homotopy…

Algebraic Topology · Mathematics 2009-10-04 Jie Wu

We show that any pseudofinite group with NIP theory and with a finite upper bound on the length of chains of centralisers is soluble-by-finite. In particular, any NIP rosy pseudofinite group is soluble-by-finite. This generalises, and…

Logic · Mathematics 2012-02-16 Dugald Macpherson , Katrin Tent

The cluster soft point is an attempt to introduce a novel generalization of the soft closure point and the soft limit point. A cluster soft set is defined to be the system of all cluster soft points of a soft set. Then the fundamental…

General Topology · Mathematics 2023-10-24 Zanyar A. Ameen , Samer Al Ghour

We define sparse saturated fusion systems and show that, for odd primes, sparse systems are constrained. This simplifies the proof of the Glauberman-Thompson p-nilpotency theorem for fusion systems and a related theorem of Stellmacher. We…

Group Theory · Mathematics 2010-06-01 Adam Glesser

Hypergraphs, increasingly utilised to model complex and diverse relationships in modern networks, have gained significant attention for representing intricate higher-order interactions. Among various challenges, cohesive subgraph discovery…

Social and Information Networks · Computer Science 2025-07-14 Dahee Kim , Hyewon Kim , Song Kim , Minseok Kim , Junghoon Kim , Yeon-Chang Lee , Sungsu Lim

This paper explores the relationship amongst the various simplicial and pseudo-simplicial objects characteristically associated to any bicategory C. It proves the fact that the geometric realizations of all of these possible candidate…

Algebraic Topology · Mathematics 2014-10-01 P. Carrasco , A. M. Cegarra , A. R. Garzón

Recommender systems attempt to reduce information overload and retain customers by selecting a subset of items from a universal set based on user preferences. While research in recommender systems grew out of information retrieval and…

Information Retrieval · Computer Science 2007-05-23 Saverio Perugini , Marcos Andre Goncalves , Edward A. Fox

Percolation theory dictates an intuitive picture depicting correlated regions in complex systems as densely connected clusters. While this picture might be adequate at small scales and apart from criticality, we show that highly correlated…

Disordered Systems and Neural Networks · Physics 2020-12-17 István A. Kovács , Róbert Juhász

Monotone systems constitute one of the most important classes of dynamical systems used in mathematical biology modeling. The objective of this paper is to extend the notion of monotonicity to systems with inputs and outputs, a necessary…

Quantitative Methods · Quantitative Biology 2007-05-23 David Angeli , Eduardo D. Sontag

Biological and cellular systems are often modeled as graphs in which vertices represent objects of interest (genes, proteins, drugs) and edges represent relational ties among these objects (binds-to, interacts-with, regulates). This…

Machine Learning · Statistics 2017-03-16 Jose Lugo-Martinez , Predrag Radivojac

$\lambda$-graph systems are labeled Bratteli diagram with shift operations. They present subshifts. Their matrix presentations are called symbolic matrix systems. We define skew products of $\lambda$-graph systems and study extensions of…

Dynamical Systems · Mathematics 2016-05-03 Kengo Matsumoto
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