Related papers: Asymmetric Lee Distance Codes for DNA-Based Storag…
While achieving a compression ratio of 2.0 bits/base, the new algorithm codes non-N bases in fixed length. It dramatically reduces the time of coding and decoding than previous DNA compression algorithms and some universal compression…
The rate vs. distance problem is a long-standing open problem in coding theory. Recent papers have suggested a new way to tackle this problem by appealing to a new hierarchy of linear programs. If one can find good dual solutions to these…
The problem of storing large amounts of information safely for a long period of time has become essential. One of the most promising new data storage mediums are the polymer-based data storage systems, like the DNA-storage system. These…
Constant dimension codes, with a prescribed minimum distance, have found recently an application in network coding. All the codewords in such a code are subspaces of $\F_q^n$ with a given dimension. A computer search for large constant…
Both maximum distance separable (MDS) codes that are not equivalent to generalized Reed-Solomon (GRS) codes (non-GRS MDS codes) and near MDS (NMDS) codes have nice applications in communication and storage systems. In this paper, we…
A constant weight binary code consists of $n$-bit binary codewords, each with exactly $w$ bits equal to 1, such that any two codewords are at least Hamming distance $d$ apart. $A(n,d,w)$ is the maximum size of a constant weight binary code…
We present a family of quantum stabilizer codes using the structure of duadic constacyclic codes over $\mathbb{F}_4$. Within this family, quantum codes can possess varying dimensions, and their minimum distances are lower bounded by a…
The number-theoretic codes are a class of codes defined by single or multiple congruences and are mainly used for correcting insertion and deletion errors. Since the number-theoretic codes are generally non-linear, the analysis method for…
Finding the minimum distance of linear codes is an NP-hard problem. Traditionally, this computation has been addressed by means of the design of algorithms that find, by a clever exhaustive search, a linear combination of some generating…
The normalized edit distance is one of the distances derived from the edit distance. It is useful in some applications because it takes into account the lengths of the two strings compared. The normalized edit distance is not defined in…
Weighted Hamming distance, as a similarity measure between binary codes and binary queries, provides superior accuracy in search tasks than Hamming distance. However, how to efficiently and accurately find $K$ binary codes that have the…
Composite DNA is a recent novel method to increase the information capacity of DNA-based data storage above the theoretical limit of 2 bits/symbol. In this method, every composite symbol does not store a single DNA nucleotide but a mixture…
In this work, we study linear codes with the folded Hamming distance, or equivalently, codes with the classical Hamming distance that are linear over a subfield. This includes additive codes. We study MDS codes in this setting and define…
We consider the problem of assembling a sequence based on a collection of its substrings observed through a noisy channel. The mathematical basis of the problem is the construction and design of sequences that may be discriminated based on…
DNA-based storage is an emerging storage technology that provides high information density and long duration. Due to the physical constraints in the reading and writing processes, error correction in DNA storage poses several interesting…
Currently known secondary construction techniques for linear codes mainly include puncturing, shortening, and extending. In this paper, we propose a novel method for the secondary construction of linear codes based on their weight…
A subspace code is a nonempty set of subspaces of a vector space $\mathbb F^n_q$. Linear codes with complementary duals, or LCD codes, are linear codes whose intersection with their duals is trivial. In this paper, we introduce a notion of…
The biggest challenge when using DNA as a storage medium is maintaining its stability. The relative occurrence of Guanine (G) and Cytosine (C) is essential for the longevity of DNA. In addition to that, reverse complementary base pairs…
The use of skew polynomial rings allows to endow linear codes with cyclic structures which are not cyclic in the classical (commutative) sense. Whenever these skew cyclic structures are carefully chosen, some control over the Hamming…
We present new constructions of quantum codes of linear or close-to-linear distance and dimension with low-weight stabilizers. Only a few constructions of such codes were previously known, and were primarily based on a specific operation…