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The development of medical vision-language foundation models has attracted significant attention in the field of medicine and healthcare due to their promising prospect in various clinical applications. While previous studies have commonly…

Computer Vision and Pattern Recognition · Computer Science 2024-02-27 Weijian Huang , Cheng Li , Hong-Yu Zhou , Jiarun Liu , Hao Yang , Yong Liang , Guangming Shi , Hairong Zheng , Shanshan Wang

With the large volume of unstructured data that increases constantly on the web, the motivation of representing the knowledge in this data in the machine-understandable form is increased. Ontology is one of the major cornerstones of…

Computation and Language · Computer Science 2021-05-10 Fatima N. AL-Aswadi , Huah Yong Chan , Keng Hoon Gan

Definition Modeling, the task of generating definitions, was first proposed as a means to evaluate the semantic quality of word embeddings-a coherent lexical semantic representations of a word in context should contain all the information…

Computation and Language · Computer Science 2023-06-16 Vincent Segonne , Timothee Mickus

Despite the great success of word embedding, sentence embedding remains a not-well-solved problem. In this paper, we present a supervised learning framework to exploit sentence embedding for the medical question answering task. The learning…

Computation and Language · Computer Science 2018-11-16 Yu Hao , Xien Liu , Ji Wu , Ping Lv

Clinical text is rich in information, with mentions of treatment, medication and anatomy among many other clinical terms. Multiple terms can refer to the same core concepts which can be referred as a clinical entity. Ontologies like the…

Computation and Language · Computer Science 2024-05-28 Akshit Achara , Sanand Sasidharan , Gagan N

The extraction and analysis of insights from medical data, primarily stored in free-text formats by healthcare workers, presents significant challenges due to its unstructured nature. Medical coding, a crucial process in healthcare, remains…

Computation and Language · Computer Science 2024-05-28 Mikhail Kulyabin , Gleb Sokolov , Aleksandr Galaida , Andreas Maier , Tomas Arias-Vergara

Mentions of new concepts appear regularly in texts and require automated approaches to harvest and place them into Knowledge Bases (KB), e.g., ontologies and taxonomies. Existing datasets suffer from three issues, (i) mostly assuming that a…

Computation and Language · Computer Science 2023-09-04 Hang Dong , Jiaoyan Chen , Yuan He , Ian Horrocks

Term extraction is one of the layers in the ontology development process which has the task to extract all the terms contained in the input document automatically. The purpose of this process is to generate list of terms that are relevant…

Information Retrieval · Computer Science 2010-03-25 Mohammad Syafrullah , Naomie Salim

Medical dialogue information extraction is becoming an increasingly significant problem in modern medical care. It is difficult to extract key information from electronic medical records (EMRs) due to their large numbers. Previously,…

Computation and Language · Computer Science 2023-03-14 Xinshi Wang , Daniel Tang

Automated analysis of clinical notes is attracting increasing attention. However, there has not been much work on medical term abbreviation disambiguation. Such abbreviations are abundant, and highly ambiguous, in clinical documents. One of…

Computation and Language · Computer Science 2019-11-01 Irene Li , Michihiro Yasunaga , Muhammed Yavuz Nuzumlalı , Cesar Caraballo , Shiwani Mahajan , Harlan Krumholz , Dragomir Radev

Term extraction is an information extraction task at the root of knowledge discovery platforms. Developing term extractors that are able to generalize across very diverse and potentially highly technical domains is challenging, as…

Computation and Language · Computer Science 2022-10-25 Francesco Fusco , Peter Staar , Diego Antognini

Biomedical information is growing rapidly in the recent years and retrieving useful data through information extraction system is getting more attention. In the current research, we focus on different aspects of relation extraction…

Computation and Language · Computer Science 2017-07-27 Elham Shahab

Automated extraction of concepts from patient clinical records is an essential facilitator of clinical research. For this reason, the 2010 i2b2/VA Natural Language Processing Challenges for Clinical Records introduced a concept extraction…

Machine Learning · Statistics 2016-11-28 Raghavendra Chalapathy , Ehsan Zare Borzeshi , Massimo Piccardi

In this paper, we show how unsupervised sense representations can be used to improve hypernymy extraction. We present a method for extracting disambiguated hypernymy relationships that propagates hypernyms to sets of synonyms (synsets),…

Computation and Language · Computer Science 2023-06-05 Dmitry Ustalov , Alexander Panchenko , Chris Biemann , Simone Paolo Ponzetto

Information extraction from narrative clinical notes is useful for patient care, as well as for secondary use of medical data, for research or clinical purposes. Many studies focused on information extraction from English clinical texts,…

Computation and Language · Computer Science 2021-04-05 Emma Chiaramello , Francesco Pinciroli , Alberico Bonalumi , Angelo Caroli , Gabriella Tognola

The growing demand for structured knowledge has led to great interest in relation extraction, especially in cases with limited supervision. However, existing distance supervision approaches only extract relations expressed in single…

Computation and Language · Computer Science 2017-08-16 Chris Quirk , Hoifung Poon

The unstructured nature of clinical notes within electronic health records often conceals vital patient-related information, making it challenging to access or interpret. To uncover this hidden information, specialized Natural Language…

The terminology used in Biomedicine shows lexical peculiarities that have required the elaboration of terminological resources and information retrieval systems with specific functionalities. The main characteristics are the high rates of…

Computation and Language · Computer Science 2012-04-02 Mónica Marrero , Sonia Sánchez-Cuadrado , Julián Urbano , Jorge Morato , José-Antonio Moreiro

The Internet has revolutionized healthcare by offering medical information ubiquitously to patients via web search. The healthcare status, complex medical information needs of patients are expressed diversely and implicitly in their medical…

Computation and Language · Computer Science 2017-10-24 Chenwei Zhang , Nan Du , Wei Fan , Yaliang Li , Chun-Ta Lu , Philip S. Yu

Medication Extraction and Mining play an important role in healthcare NLP research due to its practical applications in hospital settings, such as their mapping into standard clinical knowledge bases (SNOMED-CT, BNF, etc.). In this work, we…

Computation and Language · Computer Science 2024-12-31 Pablo Romero , Lifeng Han , Goran Nenadic