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Knot Floer homology is a knot invariant defined using holomorphic curves. In more recent work, taking cues from bordered Floer homology,the authors described another knot invariant, called "bordered knot Floer homology", which has an…

Geometric Topology · Mathematics 2019-12-05 Zoltan Szabo , Peter Ozsvath

Knot diagrams are among the most common visual tools in topology. Computer programs now make it possible to draw, manipulate and render them digitally, which proves to be useful in knot theory teaching and research. Still, an openly…

Human-Computer Interaction · Computer Science 2024-08-06 Lennart Finke , Edmund Weitz

We describe an algorithm that recognizes some (perhaps all) intrinsically knotted (IK) graphs, and can help find knotless embeddings for graphs that are not IK. The algorithm, implemented as a Mathematica program, has already been used by…

Geometric Topology · Mathematics 2013-10-10 Jonathan Miller , Ramin Naimi

We tackle three optimization problems in which a colored graph, where each node is assigned a color, must be partitioned into colorful connected components. A component is defined as colorful if each color appears at most once. The problems…

Combinatorics · Mathematics 2025-06-11 Claudia Archetti , Martina Cerulli , Carmine Sorgente

We point out that the strong slope conjecture implies that the degrees of the colored Jones knot polynomials detect the figure eight knot. Furthermore, we propose a characterization of alternating knots in terms of the Jones period and the…

Geometric Topology · Mathematics 2020-10-15 Efstratia Kalfagianni

Chord diagrams and related enlacement graphs of alternating knots are enhanced to obtain complete invariant graphs including chirality detection. Moreover, the equivalence by common enlacement graph is specified and the neighborhood graph…

Combinatorics · Mathematics 2007-05-23 Christian Soulie

We study RNA foldings and investigate their topology using a combination of knot theory and embedded rigid vertex graphs. Knot theory has been helpful in modeling biomolecules, but classical knots place emphasis on a biomolecule's…

Geometric Topology · Mathematics 2022-07-28 Jose Ceniceros , Mohamed Elhamdadi , Josef Komissar , Hitakshi Lahrani

The knot quandle is an invariant of $n$-knots. In this note, we study the knot quandles of Suciu's ribbon $n$-knots, an infinite family of knots with isomorphic knot groups. We prove that their knot quandles are mutually non-isomorphic.…

Geometric Topology · Mathematics 2025-08-22 Jumpei Yasuda

We give a combinatorial treatment of transverse homology, a new invariant of transverse knots that is an extension of knot contact homology. The theory comes in several flavors, including one that is an invariant of topological knots and…

Symplectic Geometry · Mathematics 2013-05-08 Lenhard Ng

In this report, I will start by first giving a brief introduction on knots to build some intuition before beginning the more rigorous review in the Literature Review section. There, I will define knot equivalence, the Jones polynomial…

Geometric Topology · Mathematics 2022-02-15 Matthew Stevens

For an oriented knot $K$, we construct a functor from the category of pointed quandles to the category of quandles in three different ways. We also extend the quandle cocycle invariants of knots by using these quandle-valued invariant of…

Geometric Topology · Mathematics 2014-06-11 Tetsuya Ito

A knot is a circle piecewise-linearly embedded into the 3-sphere. The topology of a knot is intimately related to that of its exterior, which is the complement of an open regular neighborhood of the knot. Knots are typically encoded by…

Geometric Topology · Mathematics 2023-03-20 Nathan M. Dunfield , Malik Obeidin , Cameron Gates Rudd

Welded knotted objects are a combinatorial extension of knot theory, which can be used as a tool for studying ribbon surfaces in $4$-space. A finite type invariant theory for ribbon knotted surfaces was developped by Kanenobu, Habiro and…

Geometric Topology · Mathematics 2025-04-18 Adrien Casejuane , Jean-Baptiste Meilhan

Data science offers a powerful tool to understand objects in multiple sciences. In this paper we utilize concept of data science, most notably topological data analysis, to extend our understanding of knot theory. This approach provides a…

Geometric Topology · Mathematics 2025-03-20 Pawel Dlotko , Davide Gurnari , Radmila Sazdanovic

Bundling of graph edges (node-to-node connections) is a common technique to enhance visibility of overall trends in the edge structure of a large graph layout, and a large variety of bundling algorithms have been proposed. However, with…

Computational Geometry · Computer Science 2016-09-06 Jaakko Peltonen , Ziyuan Lin

We generalise the finite biquandle colouring invariant to a polynomial invariant based on labelling a knot diagram with a finite birack that reduces to the biquandle colouring invariant in that case. The polynomial is an invariant of a…

Geometric Topology · Mathematics 2025-03-12 Andrew Bartholomew , Roger Fenn , Louis Kauffman

We propose a new approach for defining and searching clusters in graphs that represent real technological or transaction networks. In contrast to the standard way of finding dense parts of a graph, we concentrate on the structure of edges…

Combinatorics · Mathematics 2021-03-16 András London , Ryan R. Martin , András Pluhár

A Gauss diagram is a simple, combinatorial way to present a knot. It is known that any Vassiliev invariant may be obtained from a Gauss diagram formula that involves counting (with signs and multiplicities) subdiagrams of certain…

Geometric Topology · Mathematics 2016-11-26 Michael Brandenbursky

We introduce the notion of a $G$-family of quandles which is an algebraic system whose axioms are motivated by handlebody-knot theory, and use it to construct invariants for handlebody-knots. Our invariant can detect the chiralities of some…

Geometric Topology · Mathematics 2012-05-10 Atsushi Ishii , Masahide Iwakiri , Yeonhee Jang , Kanako Oshiro

A new computational technique based on the symbolic description utilizing kneading invariants is proposed and verified for explorations of dynamical and parametric chaos in a few exemplary systems with the Lorenz attractor. The technique…

Chaotic Dynamics · Physics 2016-12-21 Roberto Barrio , Andrey Shilnikov , Leonid Shilnikov