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Electrical neural signalling typically takes place at the time-scale of milliseconds, and is typically modeled using the cable equation. This is a good approximation for processes when ionic concentrations vary little during the time course…

Cell Behavior · Quantitative Biology 2014-03-05 Geir Halnes , Ivar Østby , Klas H. Pettersen , Stig W. Omholt , Gaute T. Einevoll

The extracellular space has an ambiguous role in neuroscience. It is present in every physiologically relevant system and often used as a measurement site in experimental recordings, but it has received subordinate attention compared to the…

Neurons and Cognition · Quantitative Biology 2017-05-02 Jurgis Pods

Measurements of electric potentials from neural activity have played a key role in neuroscience for almost a century, and simulations of neural activity is an important tool for understanding such measurements. Volume conductor (VC) theory…

Neurons and Cognition · Quantitative Biology 2021-05-04 Torbjørn V. Ness , Geir Halnes , Solveig Næss , Klas H. Pettersen , Gaute T. Einevoll

We study the effect of intracellular ion diffusion on ionic currents permeating through the cell membrane. Ion flux across the cell membrane is mediated by special proteins forming specific channels. The structure of potassium channels have…

Cell Behavior · Quantitative Biology 2015-02-20 D. Andreucci , D. Bellaveglia , E. N. M. Cirillo , S. Marconi

This article provides a theoretical basis for relating macroscopic electrical signals recorded from biological tissue, such as electroencephalogram (EEG) and local field potential (LFP), to the electrophysiological processes at the cellular…

Neurons and Cognition · Quantitative Biology 2012-09-24 Hiroyoshi Miyakawa , Toru Aonishi

In charged nanopores, ionic diffusion current reflects the ionic selectivity and ionic permeability of nanopores which determines the performance of osmotic energy conversion, i.e. the output power and efficiency. Here, theoretical…

Chemical Physics · Physics 2023-09-15 Long Ma , Zihao Gao , Jia Man , Jianyong Li , Guanghua Du , Yinghua Qiu

The flow of ions through permeable channels causes voltage drop in physiological nanodomains such as synapses, dendrites and dendritic spines, and other protrusions. How the voltage changes around channels in these nanodomains has remained…

Soft Condensed Matter · Physics 2025-01-10 Frédéric Paquin-Lefebvre , David Holcman

Complex fluids flow in complex ways in complex structures. Transport of water and various organic and inorganic molecules in the central nervous system are important in a wide range of biological and medical processes [C. Nicholson, and S.…

Biological Physics · Physics 2021-05-19 Yi Zhu , Shixin Xu , Robert S. Eisenberg , Huaxiong Huang

Continuum simulations become an important tool to uncover the mysteries in nanofluidic experiments. However, fluid flow in simulation models is usually unconsidered. Here, systematical simulations are conducted to provide a quantitative…

Chemical Physics · Physics 2024-02-08 Yinghua Qiu , Long Ma

In studies of the brain and the nervous system, extracellular signals - as measured by local field potentials (LFPs) or electroencephalography (EEG) - are of capital importance, as they allow to simultaneously obtain data from multiple…

Neurons and Cognition · Quantitative Biology 2019-06-10 Jurgis Pods

We give an explicit formula for the membrane potential of cells in terms of the intracellular and extracellular ionic concentrations, and derive equations for the ionic currents that flow through channels, exchangers and electrogenic pumps.…

Biological Physics · Physics 2007-05-23 L. P. Endresen , K. Hall , J. S. Hoye , J. Myrheim

The Maxwell equations for an homogeneous medium in which electric currents are composed of Ohmic, diffusive and impressed currents are written in the static approximation in which displacements currents are neglected. Closed exact…

Biological Physics · Physics 2016-10-26 Alejandro Cabo , Jorge J. Riera , Pedro A. Valdes Hernandez

The current-voltage (I-V) conversion characterizes the physiology of cellular microdomains and reflects cellular communication, excitability, and electrical transduction. Yet deriving such I-V laws remains a major challenge in most cellular…

Neurons and Cognition · Quantitative Biology 2018-08-29 J. Cartailler , D. Holcman

Signals recorded from neurons with extracellular planar sensors have a wide range of waveforms and amplitudes. This variety is a result of different physical conditions affecting the ion currents through a cellular membrane. The…

Noise appears in the brain due to various sources, such as ionic channel fluctuations and synaptic events. They affect the activities of the brain and influence neuron action potentials. Stochastic differential equations have been used to…

Neurons and Cognition · Quantitative Biology 2020-06-01 P R Protachevicz , M S Santos , E G Seifert , E C Gabrick , F S Borges , R R Borges , J Trobia , J D Szezech , K C Iarosz , I L Caldas , C G Antonopoulos , Y Xu , R L Viana , A M Batista

We give an explicit formula for the membrane potential of cells in terms of the intracellular and extracellular ionic concentrations, and derive equations for the ionic currents that flow through channels, exchangers and electrogenic pumps…

Biological Physics · Physics 2007-05-23 Lars Petter Endresen , Kevin Hall

We describe a simple conductance-based model neuron that includes intra- and extra-cellular ion concentration dynamics and show that this model exhibits periodic bursting. The bursting arises as the fast spiking behavior of the neuron is…

Cell Behavior · Quantitative Biology 2011-09-22 Ernest Barreto , John R. Cressman

Classical models for predicting current flow in excitable cells such as axons, originally proposed by Hodgkin and Huxley, rely on empirical voltage-gating parameters that quantify ion transport across sodium and potassium ion channels. We…

Biological Physics · Physics 2025-02-24 Vivaan Patel , Joshua D. Priosoetanto , Aashutosh Mistry , John Newman , Nitash P. Balsara

Mathematical modelling of ionic electrodiffusion and water movement is emerging as a powerful avenue of investigation to provide new physiological insight into brain homeostasis. However, in order to provide solid answers and resolve…

Numerical Analysis · Mathematics 2022-01-24 Ada J. Ellingsrud , Nicolas Boullé , Patrick E. Farrell , Marie E. Rognes

Characterizing the local voltage distribution within nanophysiological domains, driven by ionic currents through membrane channels, is crucial for studying cellular activity in modern biophysics, yet it presents significant experimental and…

Soft Condensed Matter · Physics 2026-05-14 Frédéric Paquin-Lefebvre , Alejandro Barea Moreno , David Holcman
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