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Related papers: A physical perspective on cytoplasmic streaming (i…

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We demonstrate that the permeability of the cell wall of microalga $\textit{C. reinhardtii}$ can be enhanced in controlled microstreaming flow conditions using single bubbles adherent to a wall and driven by ultrasound near their resonance…

Quantitative Methods · Quantitative Biology 2021-12-20 Angelo Pommella , Irina Harun , Klaus Hellgardt , Valeria Garbin

We study the spatial distribution of gyrotactic microorganisms transported by a three-dimensional turbulent flow generated by direct numerical simulations. We find that gyrotaxis combines with turbulent fluctuations to produce small scales…

Chaotic Dynamics · Physics 2012-06-13 Filippo De Lillo , Guido Boffetta , Massimo Cencini

One of the major characteristics of living organisms is metabolic rate, which is the amount of energy produced per unit of time. When the mass of organisms increases, the metabolic rate also increases (usually as a power function of mass),…

Other Quantitative Biology · Quantitative Biology 2024-12-02 Yuri K. Shestopaloff

We consider a finite-dimensional model for the motion of microscopic organisms whose propulsion exploits the action of a layer of cilia covering its surface. The model couples Newton's laws driving the organism, considered as a rigid body,…

Optimization and Control · Mathematics 2009-09-29 Mario Sigalotti , Jean-Claude Vivalda

Microbial growth and division are fundamental processes relevant to many areas of life science. Of particular interest are homeostasis mechanisms, which buffer growth and division from accumulating fluctuations over multiple cycles. These…

Cell Behavior · Quantitative Biology 2022-10-12 Lee Susman , Maryam Kohram , Harsh Vashistha , Jeffrey T. Nechleba , Hanna Salman , Naama Brenner

Flagellated bacteria are hydrodynamically attracted to rigid walls, yet past work shows a 'hovering' state where they swim stably at a finite height above surfaces. We use numerics and theory to reveal the physical origin of hovering.…

Biological Physics · Physics 2024-09-17 Pyae Hein Htet , Debasish Das , Eric Lauga

Growth-fragmentation processes model systems of cells that grow continuously over time and then fragment into smaller pieces. Typically, on average, the number of cells in the system exhibits asynchronous exponential growth and, upon…

Probability · Mathematics 2023-06-08 Emma Horton , Alexander R. Watson

Gyrotactic algae are bottom heavy, motile cells whose swimming direction is determined by a balance between a buoyancy torque directing them upwards and fluid velocity gradients. Gyrotaxis has, in recent years, become a paradigmatic model…

Chaotic Dynamics · Physics 2019-03-25 Massimo Cencini , Guido Boffetta , Matteo Borgnino , Filippo De Lillo

Granular particles vibrated in a fluid have been found to exhibit self-organization with attractive and repulsive interactions between the particles. These interactions have been attributed to the steady streaming flow around oscillating…

Soft Condensed Matter · Physics 2009-11-13 Florian Otto , Emmalee K. Riegler , Greg A. Voth

Spectacular collective phenomena such as jamming, turbulence, wetting, and waves emerge when living cells migrate in groups.

Biological Physics · Physics 2021-06-08 Ricard Alert , Xavier Trepat

Certain cyanobacteria, such as open ocean strains of Synechococcus, are able to swim at speeds up to 25 diameters per second, without flagella or visible changes in shape. The means by which Synechococcus generates thrust for…

Biological Physics · Physics 2009-03-24 Kurt Ehlers , Jair Koiller

In this letter we experimentally demonstrate self-organization of small tracers under the action of longitudinal Faraday waves in a narrow container. We observe a steady current formation dividing the interface in small cells given by the…

Cell alignment often forms nematic order, which can lead to anomalous collective cell flow due to the so-called active force. Although it is appreciated that cell migration is driven by traction force, a quantitative evaluation of the…

Soft Condensed Matter · Physics 2024-02-27 Masahito Uwamichi , He Li , Zihui Zhao , Yisong Yao , Hideo Higuchi , Kyogo Kawaguchi , Masaki Sano

Variations of transport efficiency in structured environments between distinct individuals in actively self-propelled systems is both hard to study and poorly understood. Here, we study the transport of a non-tumbling {\ecoli} strain, an…

Soft Condensed Matter · Physics 2023-08-28 Pooja Chopra , David Quint , Ajay Gopinathan , Bin Liu

We study a minimal model of a crawling eukaryotic cell with a chemical polarity controlled by a reaction-diffusion mechanism describing Rho GTPase dynamics. The size, shape, and speed of the cell emerge from the combination of the chemical…

Biological Physics · Physics 2017-01-11 Brian A. Camley , Yanxiang Zhao , Bo Li , Herbert Levine , Wouter-Jan Rappel

Recent study suggests that the streaming instability, one of the leading mechanisms for driving the formation of planetesimals, may not be as efficient as previously thought. Under some disc conditions, the growth timescale of the…

Earth and Planetary Astrophysics · Physics 2020-12-02 Zhaohuan Zhu , Chao-Chin Yang

The Dynamic Template model of biological cell membranes and the cytoplasm as spatially organised fluid layers is extended to plant cells, and is shown to offer a feasible shear driven mechanism for the co-alignment of internal and external…

General Physics · Physics 2008-07-15 J. T. Lofthouse

Life has a special status, it even has its own science: biology. In many ways, the logic of life seems to differ from that of atoms, molecules, planets, or any other `inanimate object'. However, life is increasingly measured using…

Other Quantitative Biology · Quantitative Biology 2021-12-16 Marc-Antoine Fardin

A swimming microorganism stirs the surrounding fluid, creating a flow field that governs not only its locomotion and nutrient uptake, but also its interactions with other microorganisms and the environment. Despite its fundamental…

A living cell actively generates traction forces on its environment with its actin cytoskeleton. These forces deform the cell elastic substrate which, in turn, affects the traction forces exerted by the cell and can consequently modify the…

Biological Physics · Physics 2022-02-03 H. Chelly , A. Jahangiri , M. Mireux , J. Étienne , D. K. Dysthe , C. Verdier , P. Recho