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Background: We describe an informatics framework for researchers and clinical investigators to efficiently perform parameter sensitivity analysis and auto-tuning for algorithms that segment and classify image features in a large dataset of…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-12-13 George Teodoro , Tahsin Kurc , Luis F. R. Taveira , Alba C. M. A. Melo , Jun Kong , Joel Saltz

Developing CPU scheduling algorithms and understanding their impact in practice can be difficult and time consuming due to the need to modify and test operating system kernel code and measure the resulting performance on a consistent…

Operating Systems · Computer Science 2013-07-17 Neetu Goel , R. B. Garg

Current computational systems are heterogeneous by nature, featuring a combination of CPUs and GPUs. As the latter are becoming an established platform for high-performance computing, the focus is shifting towards the seamless programming…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-10-23 Fábio Soldado , Fernando Alexandre , Hervé Paulino

Comprehending the performance bottlenecks at the core of the intricate hardware-software interactions exhibited by highly parallel programs on HPC clusters is crucial. This paper sheds light on the issue of automatically asynchronous MPI…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-09-06 Ayesha Afzal , Georg Hager , Stefano Markidis , Gerhard Wellein

Graphics Processing Units (GPUs) support dynamic voltage and frequency scaling (DVFS) in order to balance computational performance and energy consumption. However, there still lacks simple and accurate performance estimation of a given GPU…

Performance · Computer Science 2018-06-14 Qiang Wang , Xiaowen Chu

Today, one of the main challenges for high-performance computing systems is to improve their performance by keeping energy consumption at acceptable levels. In this context, a consolidated strategy consists of using accelerators such as…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-05-18 Manuel Costanzo , Enzo Rucci , Ulises Costi , Franco Chichizola , Marcelo Naiouf

The simplex algorithm has been successfully used for many years in solving linear programming (LP) problems. Due to the intensive computations required (especially for the solution of large LP problems), parallel approaches have also…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-11-22 Basilis Mamalis , Marios Perlitis

This article introduces a highly parallel algorithm for molecular dynamics simulations with short-range forces on single node multi- and many-core systems. The algorithm is designed to achieve high parallel speedups for strongly…

Computational Physics · Physics 2013-11-20 R. Meyer

With recent developments in parallel supercomputing architecture, many core, multi-core, and GPU processors are now commonplace, resulting in more levels of parallelism, memory hierarchy, and programming complexity. It has been necessary to…

High Energy Physics - Lattice · Physics 2017-12-04 Ruizi Li , Carleton DeTar , Steven Gottlieb , Doug Toussaint

This paper presents a methodology for simultaneous heterogeneous computing, named ENEAC, where a quad core ARM Cortex-A53 CPU works in tandem with a preprogrammed on-board FPGA accelerator. A heterogeneous scheduler distributes the tasks…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-11-16 Kris Nikov , Mohammad Hosseinabady , Rafael Asenjo , Andrés Rodríguezz , Angeles Navarro , Jose Nunez-Yanez

Deploying deep neural networks on mobile devices is increasingly important but remains challenging due to limited computing resources. On the other hand, their unified memory architecture and narrower gap between CPU and GPU performance…

Machine Learning · Computer Science 2026-02-20 Zhuojin Li , Marco Paolieri , Leana Golubchik

Breadth-first search (BFS) is a fundamental graph algorithm that presents significant challenges for parallel implementation due to irregular memory access patterns, load imbalance and synchronization overhead. In this paper, we introduce a…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-03-04 Marati Bhaskar , Raghavendra Kanakagiri

Parallel algorithms on CPU and GPU are implemented for the Unified Gas-Kinetic Scheme and their performances are investigated and compared by a two dimensional channel flow case. The parallel CPU algorithm has a one dimensional block…

Computational Physics · Physics 2018-11-02 Jizhou Liu , Fang Q. Hu , Xiaodong Li

Cutting-edge embedded system applications, such as self-driving cars and unmanned drone software, are reliant on integrated CPU/GPU platforms for their DNNs-driven workload, such as perception and other highly parallel components. In this…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-03-20 Soroush Bateni , Zhendong Wang , Yuankun Zhu , Yang Hu , Cong Liu

Background: Short-read aligners have recently gained a lot of speed by exploiting the massive parallelism of GPU. An uprising alternative to GPU is Intel MIC; supercomputers like Tianhe-2, currently top of TOP500, is built with 48,000 MIC…

Distributed, Parallel, and Cluster Computing · Computer Science 2014-02-21 Sze-Hang Chan , Jeanno Cheung , Edward Wu , Heng Wang , Chi-Man Liu , Xiaoqian Zhu , Shaoliang Peng , Ruibang Luo , Tak-Wah Lam

Programming efficiently heterogeneous systems is a major challenge, due to the complexity of their architectures. Intel oneAPI, a new and powerful standards-based unified programming model, built on top of SYCL, addresses these issues. In…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-09-16 Raúl Nozal , Jose Luis Bosque

Performance tools for emerging heterogeneous exascale platforms must address two principal challenges when analyzing execution measurements. First, measurement of large-scale executions may record mountains of performance data. Second,…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-03-11 Jonathon Anderson , Yumeng Liu , John Mellor-Crummey

CPU-GPU heterogeneous architectures are now commonly used in a wide variety of computing systems from mobile devices to supercomputers. Maximizing the throughput for multi-programmed workloads on such systems is indispensable as one single…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-05-08 Issa Saba , Eishi Arima , Dai Liu , Martin Schulz

Graphics processing units (GPUs) are recently being used to an increasing degree for general computational purposes. This development is motivated by their theoretical peak performance, which significantly exceeds that of broadly available…

Computational Physics · Physics 2015-03-17 Martin Weigel

With the ease-of-programming, flexibility and yet efficiency, MapReduce has become one of the most popular frameworks for building big-data applications. MapReduce was originally designed for distributed-computing, and has been extended to…

Distributed, Parallel, and Cluster Computing · Computer Science 2013-09-03 Mian Lu , Lei Zhang , Huynh Phung Huynh , Zhongliang Ong , Yun Liang , Bingsheng He , Rick Siow Mong Goh , Richard Huynh