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Biological organisms have evolved a wide range of immune mechanisms to defend themselves against pathogens. Beyond molecular details, these mechanisms differ in how protection is acquired, processed and passed on to subsequent generations…

Populations and Evolution · Quantitative Biology 2016-12-26 Andreas Mayer , Thierry Mora , Olivier Rivoire , Aleksandra M. Walczak

The search for high-affinity aptamers for targets such as proteins, small molecules, or cancer cells remains a formidable endeavor. Systematic Evolution of Ligands by EXponential Enrichment (SELEX) offers an iterative process to discover…

Biological Physics · Physics 2016-12-30 Fabian Spill , Zohar B. Weinstein , Atena Irani Shemirani , Nga Ho , Darash Desai , Muhammad H. Zaman

Machine Learning is a diverse field applied across various domains such as computer science, social sciences, medicine, chemistry, and finance. This diversity results in varied evaluation approaches, making it difficult to compare models…

Machine Learning · Computer Science 2025-07-08 Silvia Beddar-Wiesing , Alice Moallemy-Oureh , Marie Kempkes , Josephine M. Thomas

Given only aggregate choice data and limited information about how menus are distributed across the population, we describe what can be inferred robustly about the distribution of preferences (or more general decision rules). We strengthen…

Theoretical Economics · Economics 2024-05-16 Larry G Epstein , Kaushil Patel

Contrastive explanations clarify why an event occurred in contrast to another. They are more inherently intuitive to humans to both produce and comprehend. We propose a methodology to produce contrastive explanations for classification…

Computation and Language · Computer Science 2021-09-15 Alon Jacovi , Swabha Swayamdipta , Shauli Ravfogel , Yanai Elazar , Yejin Choi , Yoav Goldberg

Cell lineage statistics is a powerful tool for inferring cellular parameters, such as division rate, death rate or the population growth rate. Yet, in practice such an analysis suffers from a basic problem: how should we treat incomplete…

Populations and Evolution · Quantitative Biology 2023-09-14 Arthur Genthon , Takashi Nozoe , Luca Peliti , David Lacoste

Machine learning models trained on uncurated datasets can often end up adversely affecting inputs belonging to underrepresented groups. To address this issue, we consider the problem of adaptively constructing training sets which allow us…

Machine Learning · Computer Science 2021-07-21 Shubhanshu Shekhar , Greg Fields , Mohammad Ghavamzadeh , Tara Javidi

Accurate diagnostic tests are essential for effective screening and treatment. However, individual biomarkers often fail to provide sufficient diagnostic accuracy, as they typically capture only one aspect of the complex disease process.…

Methodology · Statistics 2025-07-08 Ainesh Sewak , Sandra Siegfried , Torsten Hothorn

When an experimenter has the option of running an adaptive trial, is it admissible to ignore this option and run a non-adaptive trial instead? We provide a negative answer to this question in the best-arm identification problem, where the…

Machine Learning · Statistics 2025-06-06 Guido Imbens , Chao Qin , Stefan Wager

This paper presents an analysis of the orientation selectivity properties of idealized models of complex cells in terms of affine quasi quadrature measures, which combine the responses of idealized models of simple cells in terms of affine…

Neurons and Cognition · Quantitative Biology 2025-08-26 Tony Lindeberg

Cells adapt to changing environments by sensing ligand concentrations using specific receptors. The accuracy of sensing is ultimately limited by the finite number of ligand molecules bound by receptors. Previously derived physical limits to…

Subcellular Processes · Quantitative Biology 2019-11-13 Thierry Mora , Ilya Nemenman

In binary classification, imbalance refers to situations in which one class is heavily under-represented. This issue is due to either a data collection process or because one class is indeed rare in a population. Imbalanced classification…

Methodology · Statistics 2022-01-07 Arezou Mojiri , Abbas Khalili , Ali Zeinal Hamadani

Unrolled networks have become prevalent in various computer vision and imaging tasks. Although they have demonstrated remarkable efficacy in solving specific computer vision and computational imaging tasks, their adaptation to other…

Image and Video Processing · Electrical Eng. & Systems 2025-01-13 Eric Chen , Xi Chen , Arian Maleki , Shirin Jalali

We consider the question of learnability of distribution classes in the presence of adaptive adversaries -- that is, adversaries capable of intercepting the samples requested by a learner and applying manipulations with full knowledge of…

Machine Learning · Computer Science 2025-09-08 Tosca Lechner , Alex Bie , Gautam Kamath

We derive and analyze a generic, recursive algorithm for estimating all splits in a finite cluster tree as well as the corresponding clusters. We further investigate statistical properties of this generic clustering algorithm when it…

Machine Learning · Statistics 2021-11-02 Ingo Steinwart , Bharath K. Sriperumbudur , Philipp Thomann

Discrimination and calibration represent two important properties of survival analysis, with the former assessing the model's ability to accurately rank subjects and the latter evaluating the alignment of predicted outcomes with actual…

Machine Learning · Computer Science 2024-06-04 Shi-ang Qi , Yakun Yu , Russell Greiner

Humans are capable of adjusting to changing environments flexibly and quickly. Empirical evidence has revealed that representation learning plays a crucial role in endowing humans with such a capability. Inspired by this observation, we…

Machine Learning · Computer Science 2022-05-13 Yuzhen Qin , Tommaso Menara , Samet Oymak , ShiNung Ching , Fabio Pasqualetti

We propose thresholding as an approach to deal with class imbalance. We define the concept of thresholding as a process of determining a decision boundary in the presence of a tunable parameter. The threshold is the maximum value of this…

Machine Learning · Computer Science 2016-07-12 Charmgil Hong , Rumi Ghosh , Soundar Srinivasan

The problem of constructing Bayesian optimal discriminating designs for a class of regression models with respect to the T-optimality criterion introduced by Atkinson and Fedorov (1975a) is considered. It is demonstrated that the…

Methodology · Statistics 2014-12-09 Holger Dette , Viatcheslav B. Melas , Roman Guchenko

In 2019, Anderson et al. proposed the concept of rankability, which refers to a dataset's inherent ability to be meaningfully ranked. In this article, we give an expository review of the linear ordering problem (LOP) and then use it to…

Optimization and Control · Mathematics 2021-04-14 Thomas R. Cameron , Sebastian Charmot , Jonad Pulaj