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Within the field of phylogenetics there is growing interest in measures for summarising the dissimilarity, or 'incongruence', of two or more phylogenetic trees. Many of these measures are NP-hard to compute and this has stimulated a…

Data Structures and Algorithms · Computer Science 2015-03-03 Steven Kelk , Leo van Iersel , Celine Scornavacca

Access limitations are restrictions in the way in which the tuples of a relation can be accessed. Under access limitations, query answering becomes more complex than in the traditional case, with no guarantee that the answer tuples that can…

Databases · Computer Science 2014-01-06 Davide Martinenghi

Existential rules, long known as tuple-generating dependencies in database theory, have been intensively studied in the last decade as a powerful formalism to represent ontological knowledge in the context of ontology-based query answering.…

Logic in Computer Science · Computer Science 2018-10-05 Michel Leclere , Marie-Laure Mugnier , Michael Thomazo , Federico Ulliana

We consider the two categories of termination problems of quantum programs with nondeterminism: 1) Is an input of a program terminating with probability one under all schedulers? If not, how can a scheduler be synthesized to evidence the…

Quantum Physics · Physics 2024-02-27 Jianling Fu , Hui Jiang , Ming Xu , Yuxin Deng , Zhi-Bin Li

The finite satisfiability problem of monadic second order logic is decidable only on classes of structures of bounded tree-width by the classic result of Seese (1991). We prove the following problem is decidable: Input: (i) A monadic second…

Logic in Computer Science · Computer Science 2016-04-19 Tomer Kotek , Helmut Veith , Florian Zuleger

Bounded model checking of pointer programs is a debugging technique for programs that manipulate dynamically allocated pointer structures on the heap. It is based on the following four observations. First, error conditions like dereference…

Logic in Computer Science · Computer Science 2016-03-02 Witold Charatonik , Piotr Witkowski

We study how to evaluate MSO queries with free variables on trees, within the framework of enumeration algorithms. Previous work has shown how to enumerate answers with linear-time preprocessing and delay linear in the size of each output,…

Databases · Computer Science 2018-06-01 Antoine Amarilli , Pierre Bourhis , Stefan Mengel

Regular tree grammars and regular path expressions constitute core constructs widely used in programming languages and type systems. Nevertheless, there has been little research so far on frameworks for reasoning about path expressions…

Databases · Computer Science 2010-08-31 Everardo Barcenas , Pierre Geneves , Nabil Layaida , Alan Schmitt

Transductions are binary relations of finite words. For rational transductions, i.e., transductions defined by finite transducers, the inclusion, equivalence and sequential uniformisation problems are known to be undecidable. In this paper,…

Formal Languages and Automata Theory · Computer Science 2016-03-01 Emmanuel Filiot , Ismaël Jecker , Christof Löding , Sarah Winter

Understanding the evolution of a set of genes or species is a fundamental problem in evolutionary biology. The problem we study here takes as input a set of trees describing {possibly discordant} evolutionary scenarios for a given set of…

Data Structures and Algorithms · Computer Science 2019-07-10 Cedric Chauve , Mark Jones , Manuel Lafond , Céline Scornavacca , Mathias Weller

Open Answer Set Programming (OASP) is an attractive framework for integrating ontologies and rules. In general OASP is undecidable. In previous work we provided a tableau-based algorithm for satisfiability checking w.r.t. forest logic…

Logic in Computer Science · Computer Science 2010-11-30 Cristina Feier , Stijn Heymans

The problem of determining whether a probabilistic program terminates almost surely (i.e.~with probability one) is undecidable, and actually $\Pi^0_2$-complete. For this reason, a growing literature has explored classes of programs for…

Logic in Computer Science · Computer Science 2026-05-01 Ugo Dal Lago , Guido Fiorillo , Paolo Pistone

This paper presents a complete axiomatization of Monadic Second-Order Logic (MSO) over infinite trees. MSO on infinite trees is a rich system, and its decidability ("Rabin's Tree Theorem") is one of the most powerful known results…

Logic in Computer Science · Computer Science 2023-06-22 Anupam Das , Colin Riba

We study the problem of learning a node-labeled tree given independent traces from an appropriately defined deletion channel. This problem, tree trace reconstruction, generalizes string trace reconstruction, which corresponds to the tree…

Computational Complexity · Computer Science 2020-09-22 Sami Davies , Miklos Z. Racz , Cyrus Rashtchian

The chase is a fundamental tool for existential rules. Several chase variants are known, which differ on how they handle redundancies possibly caused by the introduction of nulls. Given a chase variant, the halting problem takes as input a…

Artificial Intelligence · Computer Science 2018-10-23 Stathis Delivorias , Michel Leclere , Marie-Laure Mugnier , Federico Ulliana

The decidability of equivalence for three important classes of tree transducers is discussed. Each class can be obtained as a natural restriction of deterministic macro tree transducers (MTTs): (1) no context parameters, i.e., top-down tree…

Formal Languages and Automata Theory · Computer Science 2014-05-23 Sebastian Maneth

Recursive queries have been traditionally studied in the framework of datalog, a language that restricts recursion to monotone queries over sets, which is guaranteed to converge in polynomial time in the size of the input. But modern big…

Databases · Computer Science 2024-01-26 Mahmoud Abo Khamis , Hung Q. Ngo , Reinhard Pichler , Dan Suciu , Yisu Remy Wang

The decision tree recursively partitions the input space into regions and derives axis-aligned decision boundaries from data. Despite its simplicity and interpretability, decision trees lack parameterized representation, which makes it…

Machine Learning · Computer Science 2024-11-19 Jinxiong Zhang

Matching Dependencies (MDs) are a relatively recent proposal for declarative entity resolution. They are rules that specify, on the basis of similarities satisfied by values in a database, what values should be considered duplicates, and…

Databases · Computer Science 2014-04-08 Leopoldo Bertossi , Jaffer Gardezi

Patterns are words with terminals and variables. The language of a pattern is the set of words obtained by uniformly substituting all variables with words that contain only terminals. Length constraints restrict valid substitutions of…

Formal Languages and Automata Theory · Computer Science 2025-03-03 Dirk Nowotka , Max Wiedenhöft