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In the near future, all the human genes will be identified. But understanding the functions coded in the genes is a much harder problem. For example, by using block entropy, one has that the DNA code is closer to a random code then written…

Numerical Analysis · Mathematics 2007-07-13 Torbjörn Lundh

Probe-based data storage attracted many researchers from academia and industry, resulting in unprecendeted high data-density demonstrations. This topical review gives a comprehensive overview of the main contributions that led to the major…

Instrumentation and Detectors · Physics 2015-11-30 Wabe W. Koelmans , Johan B. C. Engelen , L. Abelmann

Recent advances in next-generation sequencing technologies have facilitated the use of deoxyribonucleic acid (DNA) as a novel covert channels in steganography. There are various methods that exist in other domains to detect hidden messages…

Machine Learning · Computer Science 2018-10-08 Ho Bae , Byunghan Lee , Sunyoung Kwon , Sungroh Yoon

Neural Architecture Search (NAS) is a popular tool for automatically generating Neural Network (NN) architectures. In early NAS works, these tools typically optimized NN architectures for a single metric, such as accuracy. However, in the…

Neural and Evolutionary Computing · Computer Science 2023-04-05 Emil Njor , Jan Madsen , Xenofon Fafoutis

The continuously increasing amount of digital data generated by today's society asks for better storage solutions. This survey looks at a new generation of coding techniques designed specifically for the needs of distributed networked…

Distributed, Parallel, and Cluster Computing · Computer Science 2013-01-31 Anwitaman Datta , Frederique Oggier

In recent years significant attention has been attracted to proposals which utilize DNA for nanotechnological applications. Potential applications of these ideas range from the programmable self-assembly of colloidal crystals, to biosensors…

Soft Condensed Matter · Physics 2008-05-02 Nicholas A. Licata

Network codes designed specifically for distributed storage systems have the potential to provide dramatically higher storage efficiency for the same availability. One main challenge in the design of such codes is the exact repair problem:…

Information Theory · Computer Science 2011-09-02 Dimitris S. Papailiopoulos , Jianqiang Luo , Alexandros G. Dimakis , Cheng Huang , Jin Li

We consider the problem of storing and retrieving information from synthetic DNA media. The mathematical basis of the problem is the construction and design of sequences that may be discriminated based on their collection of substrings…

Information Theory · Computer Science 2015-02-03 Han Mao Kiah , Gregory J. Puleo , Olgica Milenkovic

The rapid development of the DNA nanotechnology field has been facilitated by advances in CAD software. However, as more complex concepts arose, the lag between the needs and software capabilities appeared. Further derailed by manual…

Quantitative Methods · Quantitative Biology 2021-11-30 Samson Petrosyan , Grigory Tikhomirov

Today, the protection of information, ensuring of the safety and the recall in lossless in case of need is highly significant and it is seen as a major threat in the field. Information security is possible by hiding the available data, by…

Cryptography and Security · Computer Science 2019-02-13 Nurettin Topaloglu , M. Hanefi Calp , Burak Turk

Regenerating codes allow distributed storage systems to recover from the loss of a storage node while transmitting the minimum possible amount of data across the network. We present a systematic computer search for optimal systematic…

Information Theory · Computer Science 2009-10-14 Daniel Cullina , Alexandros G. Dimakis , Tracey Ho

In this paper we study the structure of specific linear codes called DNA codes. The first attempts on studying such codes have been proposed over four element rings which are naturally matched with DNA four letters. Later, double (pair) DNA…

Combinatorics · Mathematics 2017-03-31 Fatmanur Gürsoy , Elif Segah Oztas , Irfan Siap

The Internet is a ubiquitous and affordable communications network suited for e-commerce and medical image communications. Security has become a major issue as data communication channels can be intruded by intruders during transmission.…

Cryptography and Security · Computer Science 2013-05-07 Grasha Jacob , A. Murugan

A blockchain is a decentralised linked data structure that is characterised by its inherent resistance to data modification, but it is deficient in search queries, primarily due to its inferior data formatting. A distributed database is…

Databases · Computer Science 2019-01-11 Muhammad Muzammal , Qiang Qu , Bulat Nasrulin , Anders Skovsgaard

DNA sequencing is revolutionising the field of medicine. DNA sequencers, the machines which perform DNA sequencing, have evolved from the size of a fridge to that of a mobile phone over the last two decades. The cost of sequencing a human…

Genomics · Quantitative Biology 2021-01-14 Hasindu Gamaarachchi

Due to their sequential nature, traditional DNA synthesis methods are expensive in terms of time and resources. They also fabricate multiple copies of the same strand, introducing redundancy. This redundancy can be leveraged to enhance the…

Information Theory · Computer Science 2025-10-29 Frederik Walter , Yonatan Yehezkeally

DNA synthesis is considered as one of the most expensive components in current DNA storage systems. In this paper, focusing on a common synthesis machine, which generates multiple DNA strands in parallel following a fixed supersequence,we…

Information Theory · Computer Science 2025-05-13 Yajuan Liu , Tolga M. Duman

Enzymatic DNA labeling is a powerful tool with applications in biochemistry, molecular biology, biotechnology, medical science, and genomic research. This paper contributes to the evolving field of DNA-based data storage by presenting a…

Information Theory · Computer Science 2024-05-15 Daniella Bar-Lev , Tuvi Etzion , Eitan Yaakobi , Zohar Yakhini

Precision, validity, reliability, timeliness, availability, and granularity are the desired characteristics for data and information systems. However due to the desired trait of data mutability, information systems have inherently lacked…

Cryptography and Security · Computer Science 2021-10-20 Jared Newell , Quazi Mamun , Sabih ur Rehman , Md Zahidul Islam

We consider error-correcting coding for DNA-based storage. We model the DNA storage channel as a multi-draw IDS channel where the input data is chunked into $M$ short DNA strands, which are copied a random number of times, and the channel…

Information Theory · Computer Science 2023-06-22 Lorenz Welter , Issam Maarouf , Andreas Lenz , Antonia Wachter-Zeh , Eirik Rosnes , Alexandre Graell i Amat
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