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In this work we present a flexible tool for tumor progression, which simulates the evolutionary dynamics of cancer. Tumor progression implements a multi-type branching process where the key parameters are the fitness landscape, the mutation…

Populations and Evolution · Quantitative Biology 2013-03-22 Johannes G. Reiter , Ivana Bozic , Krishnendu Chatterjee , Martin A. Nowak

Following antigen stimulation, the net outcomes of a T cell response are shaped by integrated signals from both positive co-stimulatory and negative regulatory molecules. Recently, the blockade of negative regulatory molecules (i.e. immune…

Cell Behavior · Quantitative Biology 2017-09-19 Haidong Dong , Yiyi Yan , Roxana S. Dronca , Svetomir N. Markovic

Tumour cells have to acquire a number of capabilities if a neoplasm is to become a cancer. One of these key capabilities is increased motility which is needed for invasion of other tissues and metastasis. This paper presents a qualitative…

Tissues and Organs · Quantitative Biology 2009-09-29 David Basanta , Haralambos Hatzikirou , Andreas Deutsch

There is evidence of synergy between radiotherapy and immunotherapy. Radiotherapy can increase liberation of tumor antigens, causing activation of antitumor T-cells. This effect can be boosted with immunotherapy. Radioimmunotherapy has…

We model a particle entering a complicated system from free space using an infinite chain of simple harmonic oscillators coupled to a finite, $n$-site cluster. For a particle wavepacket with small wavenumber, an expression for the time…

Quantum Physics · Physics 2018-12-13 Erin Crawley

Time-delay systems are an important class of dynamical systems that provide a solid mathematical framework to deal with many application domains of interest. In this paper we focus on nonlinear control systems with unknown and time-varying…

Optimization and Control · Mathematics 2011-12-13 Giordano Pola , Pierdomenico Pepe , Maria Domenica Di Benedetto

We generalize the Kuramoto model of coupled oscillators to allow time-delayed interactions. New phenomena include bistability between synchronized and incoherent states, and unsteady solutions with time-dependent order parameters. We derive…

chao-dyn · Physics 2009-10-31 M. K. Stephen Yeung , Steven H. Strogatz

We introduce the map representation of a time-delayed system in the presence of delay time modulation. Based on this representation, we find the method by which to analyze the stability of that kind of a system. We apply this method to a…

Chaotic Dynamics · Physics 2007-05-23 Won-Ho Kye , Muhan Choi , Tae-Yoon Kwon , Chil-Min Kim , Young-Jai Park

Despite recent technological advances in genomic sciences, our understanding of cancer progression and its driving genetic alterations remains incomplete. Here, we introduce TiMEx, a generative probabilistic model for detecting patterns of…

Molecular Networks · Quantitative Biology 2015-10-28 Simona Constantinescu , Ewa Szczurek , Pejman Mohammadi , Jörg Rahnenführer , Niko Beerenwinkel

Despite advances in methods to interrogate tumor biology, the observational and population-based approach of classical cancer research and clinical oncology does not enable anticipation of tumor outcomes to hasten the discovery of cancer…

Quasi steady state assumptions are often used to simplify complex systems of ordinary differential equations in modelling of biochemical processes. The simplified system is designed to have the same qualitative properties as the original…

Dynamical Systems · Mathematics 2013-12-11 Tomáš Vejchodský

A feedback mechanism that involves the proteins p53 and mdm2, induces cell death as a controled response to severe DNA damage. A minimal model for this mechanism demonstrates that the respone may be dynamic and connected with the time…

Disordered Systems and Neural Networks · Physics 2009-11-07 G. Tiana , M. H. Jensen , K. Sneppen

Real-world dynamical systems with retardation effects are described in general not by a single, precisely defined time delay, but by a range of delay times. An exact mapping onto a set of $N+1$ ordinary differential equations exists when…

Dynamical Systems · Mathematics 2023-08-16 Daniel Henrik Nevermann , Claudius Gros

We investigate the transient times for the onset of control of steady states by time-delayed feedback. The optimization of control by minimising the transient time before control becomes effective is discussed analytically and numerically,…

Adaptation and Self-Organizing Systems · Physics 2009-12-10 Robert C. Hinz , Philipp Hövel , Eckehard Schöll

Mechanical models for tumor growth have been used extensively in recent years for the analysis of medical observations and for the prediction of cancer evolution based on imaging analysis. This work deals with the numerical approximation of…

Numerical Analysis · Mathematics 2015-04-24 Konstantina Trivisa , Franziska Weber

In the studies of plant infections, the plant immune response is known to play an essential role. In this paper we derive and analyse a new mathematical model of plant immune response with particular account for post-transcriptional gene…

Chaotic Dynamics · Physics 2015-11-18 G. Neofytou , Y. N. Kyrychko , K. B. Blyuss

We investigate the effect of time delay on the dynamical model of love. The local stability analysis proves that the time delay on the return function can cause a Hopf bifurcation and a cyclic love dynamics. The condition for the occurrence…

Chaotic Dynamics · Physics 2018-02-14 Woo-Sik Son , Young-Jai Park

The finite duration of collisions appear as time-nonlocality in the kinetic equation. Analyzing the corresponding quantum kinetic equation for dense interacting Fermi systems a delay differential equation is obtained which combines time…

Nuclear Theory · Physics 2016-09-08 Klaus Morawetz

This paper studies viability and control synthesis for a delayed SIR epidemic. The model integrates a constant delay representing an incubation/latency time. The control inputs model non-pharmaceutical interventions, while an intensive care…

Optimization and Control · Mathematics 2024-12-09 Dimitri Breda , Matteo Della Rossa , Lorenzo Freddi

This paper deals with a nonlinear system of partial differential equations modeling a simplified tumor-induced angiogenesis taking into account only the interplay between tumor angiogenic factors and endothelial cells. Considered model…

Analysis of PDEs · Mathematics 2015-06-04 Tomasz Cieslak , Cristian Morales-Rodrigo