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In this paper, we wish to investigate the dynamics of information transfer in evolutionary dynamics. We use information theoretic tools to track how much information an evolving population has obtained and managed to retain about different…

Populations and Evolution · Quantitative Biology 2021-04-09 Nicholas Guttenberg

Many biological phenomena or social events critically depend on how information evolves in complex networks. However, a general theory to characterize information evolution is yet absent. Consequently, numerous unknowns remain about the…

Biological Physics · Physics 2022-07-20 Yang Tian , Guoqi Li , Pei Sun

Theoretical computer science has found fertile ground in many areas of mathematics. The approach has been to consider classical problems through the prism of computational complexity, where the number of basic computational steps taken to…

Cryptography and Security · Computer Science 2007-05-23 Shafi Goldwasser

In order to make a case for or against a trend in the evolution of complexity in biological evolution, complexity needs to be both rigorously defined and measurable. A recent information-theoretic (but intuitively evident) definition…

Biological Physics · Physics 2016-09-08 Christoph Adami , Charles Ofria , Travis C. Collier

We investigate a stationary process's crypticity---a measure of the difference between its hidden state information and its observed information---using the causal states of computational mechanics. Here, we motivate crypticity and cryptic…

Data Analysis, Statistics and Probability · Physics 2015-05-30 John R. Mahoney , Christopher J. Ellison , Ryan G. James , James P. Crutchfield

We explore the commonalities between methods for assuring the security of computer systems (cybersecurity) and the mechanisms that have evolved through natural selection to protect vertebrates against pathogens, and how insights derived…

Information is a key concept in evolutionary biology. Information is stored in biological organism's genomes, and used to generate the organism as well as to maintain and control it. Information is also "that which evolves". When a…

Populations and Evolution · Quantitative Biology 2012-07-25 Christoph Adami

In quantum mechanics, outcomes of measurements on a state have a probabilistic interpretation while the evolution of the state is treated deterministically. Here we show that one can also treat the evolution as being probabilistic in nature…

Quantum Physics · Physics 2009-11-10 J. Oppenheim , B. Reznik

We present a theoretical as well as experimental investigation of a population of self-replicating segments of code subject to random mutation and survival of the fittest. Under the assumption that such a system constitutes a minimal system…

adap-org · Physics 2008-02-03 Chris Adami

Assessing where and how information is stored in biological networks (such as neuronal and genetic networks) is a central task both in neuroscience and in molecular genetics, but most available tools focus on the network's structure as…

Information Theory · Computer Science 2023-02-24 Clifford Bohm , Douglas Kirkpatrick , Victoria Cao , Christoph Adami

Cryptography, derived from Greek meaning hidden writing, uses mathematical techniques to secure information by converting it into an unreadable format. While cryptography as a science began around 100 years ago, its roots trace back to…

Cryptography and Security · Computer Science 2024-11-25 Fernando Peralta Castro

A fundamental question in the conjunction of information theory, biophysics, bioinformatics and thermodynamics relates to the principles and processes that guide the development of natural intelligence in natural environments where…

Neural and Evolutionary Computing · Computer Science 2024-12-31 Serge Dolgikh

We show why the amount of information communicated between the past and future--the excess entropy--is not in general the amount of information stored in the present--the statistical complexity. This is a puzzle, and a long-standing one,…

Statistical Mechanics · Physics 2013-05-29 James P. Crutchfield , Christopher J. Ellison , John R. Mahoney

Complex networks describe a wide range of systems in nature and society, much quoted examples including the cell, a network of chemicals linked by chemical reactions, or the Internet, a network of routers and computers connected by physical…

Statistical Mechanics · Physics 2016-08-31 Reka Albert , Albert-Laszlo Barabasi

Nature is full of random networks of complex topology describing such apparently disparate systems as biological, economical or informatical ones. Their most characteristic feature is the apparent scale-free character of interconnections…

Condensed Matter · Physics 2007-05-23 G. Wilk , Z. Wlodarczyk

In this tutorial, selected topics of cryptology and of computational complexity theory are presented. We give a brief overview of the history and the foundations of classical cryptography, and then move on to modern public-key cryptography.…

Computational Complexity · Computer Science 2007-05-23 Jörg Rothe

Evolution by Natural Selection is a process by which progeny inherit some properties from their progenitors with small variation. These properties are subject to Natural Selection and are called adaptive traits and carriers of the latter…

Analysis of PDEs · Mathematics 2024-01-29 Gonzalo Galiano , Yosef Cohen

Life on earth is distinguished by long-lived correlations in time. The patterns of material organization that characterize living organisms today are contingent on events that occurred billions of years ago. This contingency is a necessary…

Soft Condensed Matter · Physics 2021-01-06 Peter M. Tzelios , Kyle J. M. Bishop

The evolution processes of complex systems carry key information in the systems' functional properties. Applying machine learning algorithms, we demonstrate that the historical formation process of various networked complex systems can be…

Physics and Society · Physics 2024-03-25 Junya Wang , Yi-Jiao Zhang , Cong Xu , Jiaze Li , Jiachen Sun , Jiarong Xie , Ling Feng , Tianshou Zhou , Yanqing Hu

Natural selection and random drift are competing phenomena for explaining the evolution of populations. Combining a highly fit mutant with a population structure that improves the odds that the mutant spreads through the whole population…

Populations and Evolution · Quantitative Biology 2009-08-14 Valmir C. Barbosa , Raul Donangelo , Sergio R. Souza
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