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This work incorporates topological features via persistence diagrams to classify point cloud data arising from materials science. Persistence diagrams are multisets summarizing the connectedness and holes of given data. A new distance on…

Machine Learning · Statistics 2019-11-11 Vasileios Maroulas , Cassie Putman Micucci , Adam Spannaus

The {\em bottleneck distance} is a natural measure of the distance between two finite point sets of equal cardinality, defined as the minimum over all bijections between the point sets of the maximum distance between any pair of points put…

Computational Geometry · Computer Science 2021-05-06 Brendan Mumey

Visualization in the emerging field of topological data analysis has progressed from persistence barcodes and persistence diagrams to display of two-parameter persistent homology. Although persistence barcodes and diagrams have permitted…

Applications · Statistics 2019-01-08 Raoul R. Wadhwa , Andrew Dhawan , Drew F. K. Williamson , Jacob G. Scott

Biological and physical systems often exhibit distinct structures at different spatial/temporal scales. Persistent homology is an algebraic tool that provides a mathematical framework for analyzing the multi-scale structures frequently…

Algebraic Topology · Mathematics 2016-02-01 Jonathan Jaquette , Miroslav Kramár

We build a functorial pipeline for persistent homology. The input to this pipeline is a filtered simplicial complex indexed by any finite metric lattice and the output is a persistence diagram defined as the M\"obius inversion of its…

Algebraic Topology · Mathematics 2024-08-29 Alexander McCleary , Amit Patel

The Hausdorff distance is a relatively new measure of similarity of graphs. The notion of the Hausdorff distance considers a special kind of a common subgraph of the compared graphs and depends on the structural properties outside of the…

Combinatorics · Mathematics 2023-06-22 Aleksander Kelenc

Given a metric pair $(X,A)$, i.e. a metric space $X$ and a distinguished closed set $A \subset X$, one may construct in a functorial way a pointed pseudometric space $\mathcal{D}_\infty(X,A)$ of persistence diagrams equipped with the…

We describe new approaches for distances between pairs of 2-dimensional surfaces (embedded in 3-dimensional space) that use local structures and global information contained in inter-structure geometric relationships. We present algorithms…

Numerical Analysis · Mathematics 2015-05-30 D. Boyer , Y. Lipman , E. St. Clair , J. Puente , T. Funkhouser , B. Patel , J. Jernvall , I. Daubechies

Polynomials are common algebraic structures, which are often used to approximate functions including probability distributions. This paper proposes to directly define polynomial distributions in order to describe stochastic properties of…

Information Theory · Computer Science 2022-12-12 Yue Yu , Pavel Loskot

A persistence module with $m$ discrete parameters is a diagram of vector spaces indexed by the poset $\mathbb{N}^m$. If we are only interested in the large scale behavior of such a diagram, then we can consider two diagrams equivalent if…

Algebraic Topology · Mathematics 2026-05-22 Martin Frankland , Donald Stanley

We provide a naturally isomorphic description of the persistence map from merge trees to barcodes in terms of a monotone map from the partition lattice to the subset lattice. Our description is local, which offers the potential to speed up…

Algebraic Topology · Mathematics 2022-03-02 Brendan Mallery , Adélie Garin , Justin Curry

Many combinatorial optimization problems can be formulated as the search for a subgraph that satisfies certain properties and minimizes the total weight. We assume here that the vertices correspond to points in a metric space and can take…

Data Structures and Algorithms · Computer Science 2024-12-25 Marin Bougeret , Jérémy Omer , Michael Poss

This is a computational study of bottlenecks on algebraic varieties. The bottlenecks of a smooth variety $X \subseteq \mathbb{C}^n$ are the lines in $\mathbb{C}^n$ which are normal to $X$ at two distinct points. The main result is a…

Algebraic Geometry · Mathematics 2018-04-30 David Eklund

This paper presents an algorithm for the efficient approximation of the saddle-extremum persistence diagram of a scalar field. Vidal et al. introduced recently a fast algorithm for such an approximation (by interrupting a progressive…

Graphics · Computer Science 2021-08-13 Jules Vidal , Julien Tierny

High order networks are weighted hypergraphs col- lecting relationships between elements of tuples, not necessarily pairs. Valid metric distances between high order networks have been defined but they are difficult to compute when the…

Social and Information Networks · Computer Science 2016-05-04 Weiyu Huang , Alejandro Ribeiro

The matching distance is a pseudometric on multi-parameter persistence modules, defined in terms of the weighted bottleneck distance on the restriction of the modules to affine lines. It is known that this distance is stable in a reasonable…

Algebraic Topology · Mathematics 2019-05-29 Michael Kerber , Michael Lesnick , Steve Oudot

Motivated by applications in robotics and computer vision, we study problems related to spatial reasoning of a 3D environment using sublevel sets of polynomials. These include: tightly containing a cloud of points (e.g., representing an…

Optimization and Control · Mathematics 2017-03-09 Amir Ali Ahmadi , Georgina Hall , Ameesh Makadia , Vikas Sindhwani

Different types of two- and three-dimensional representations of a finite metric space are studied that focus on the accurate representation of the linear order among the distances rather than their actual values. Lower and upper bounds for…

Combinatorics · Mathematics 2007-05-23 Jobst Heitzig

This short note establishes explicit and broadly applicable relationships between persistence-based distances computed locally and globally. In particular, we show that the bottleneck distance between two zigzag persistence modules…

Algebraic Topology · Mathematics 2019-03-21 Ellen Gasparovic , Maria Gommel , Emilie Purvine , Radmila Sazdanovic , Bei Wang , Yusu Wang , Lori Ziegelmeier

The input to the distant representatives problem is a set of $n$ objects in the plane and the goal is to find a representative point from each object while maximizing the distance between the closest pair of points. When the objects are…

Computational Geometry · Computer Science 2021-08-18 Therese Biedl , Anna Lubiw , Anurag Murty Naredla , Peter Dominik Ralbovsky , Graeme Stroud