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Microtubules (MTs) are cytoplasmic protein polymers that are essential for fundamental cellular processes including the maintenance of cell shape, organelle transport and formation of the mitotic spindle. Microtubule dynamic instability is…

Biomolecules · Quantitative Biology 2014-04-09 Chunlei Li , Jun Li , Holly V. Goodson , Mark S. Alber

We study the drift of suspended micro-particles in a viscous liquid pumped back and forth through a periodic lattice of pores (drift ratchet). In order to explain the particle drift observed in such an experiment, we present an…

Fluid Dynamics · Physics 2012-05-22 Philippe Beltrame , Peter Talkner , Peter Hänggi

We have revealed a growing local speed wave of increase in speed that can randomly occur in synchronized flow (S) at a highway bottleneck. The development of such a traffic flow instability leads to free flow (F) at the bottleneck;…

Physics and Society · Physics 2016-01-20 Boris S. Kerner

A nonuniform system is considered consisting of two phases with different densities of particles. At each given time the distribution of the phases in space is chaotic: each phase filling a set of regions with random shapes and locations. A…

Statistical Mechanics · Physics 2015-06-25 V. I. Yukalov , E. P. Yukalova

Various lattice gas automata have been proposed in the past decades to simulate physics and address a host of problems on collective dynamics arising in diverse fields. In this work, we employ the lattice gas model defined on the sphere to…

Statistical Mechanics · Physics 2017-12-29 Zhenwei Yao

We study the behavior of the stationary velocity of a driven particle in an environment of mobile hard-core obstacles. Based on a lattice gas model, we demonstrate analytically that the drift velocity can exhibit a nonmonotonic dependence…

Statistical Mechanics · Physics 2015-06-23 O. Bénichou , P. Illien , G. Oshanin , A. Sarracino , R. Voituriez

We have developed a two dimensional stochastic molecular dynamics model for the description of intra cellular collective motion of bio motors, in particular Kinesins, on a microtubular track. The model is capable or reproducing the…

Soft Condensed Matter · Physics 2010-06-22 Yousef Jamali , M. Ebrahim Foulaadvand , H. Rafii Tabar

We study analytically the dynamics and the micro-structural changes of a host medium caused by a driven tracer particle moving in a confined, quiescent molecular crowding environment. Imitating typical settings of active micro-rheology…

Statistical Mechanics · Physics 2016-03-17 O. Bénichou , P. Illien , G. Oshanin , A. Sarracino , R. Voituriez

We derive a model describing spatio-temporal organization of an array of microtubules interacting via molecular motors. Starting from a stochastic model of inelastic polar rods with a generic anisotropic interaction kernel we obtain a set…

Soft Condensed Matter · Physics 2007-05-23 Igor S. Aranson , Lev S. Tsimring

This paper studies a stochastic model that describes the evolution of vehicle densities in a road network. It is consistent with the class of (deterministic) kinematic wave models, which describe traffic flows on the basis of conservation…

Probability · Mathematics 2021-02-11 Michel Mandjes , Jaap Storm

Within living cells, the transport of cargo is accomplished by groups of molecular motors. Such collective transport could utilize mechanisms which emerge from inter-motor interactions in ways that are yet to be fully understood. Here we…

Biomolecules · Quantitative Biology 2016-10-04 David Ando , Michelle K. Mattson , Jing Xu , Ajay Gopinathan

We study a message passing model, applicable also to traffic problems. The model is implemented in a discrete lattice, where particles move towards their destination, with fluctuations around the minimal distance path. A repulsive…

Condensed Matter · Physics 2009-10-28 I. Campos , A. Tarancon , F. Clerot , L. A. Fernandez

Boundary-induced transport in particle systems with anomalous diffusion exhibits rectification, negative resistance, and hysteresis phenomena depending on the way the drive acts on the boundary. The solvable case of a 1D system…

Statistical Mechanics · Physics 2009-11-07 Mauro Sellitto

We introduce and study a deterministic lattice model describing the motion of an infinite system of oppositely charged particles under the action of a constant electric field. As an application this model represents a traffic flow of cars…

Dynamical Systems · Mathematics 2009-11-13 Michael Blank

The dynamic behavior of microtubules in solution can be strongly modified by interactions with walls or other structures. We examine here a microtubule growth model where the increase in size of the plus-end is perturbed by collisions with…

Soft Condensed Matter · Physics 2010-09-29 Vladimir A. Baulin , Carlos M. Marques , Fabrice Thalmann

This paper provides an introduction to some stochastic models of lattice gases out of equilibrium and a discussion of results of various kinds obtained in recent years. Although these models are different in their microscopic features, a…

Statistical Mechanics · Physics 2015-12-18 L. Bertini , A. De Sole , D. Gabrielli , G. Jona--Lasinio , C. Landim

Inspired by patterns observed in mixtures of microtubules and molecular motors, we propose continuum equations for the evolution of motor density, and microtubule orientation. The chief ingredients are the transport of motors along tubules,…

Statistical Mechanics · Physics 2019-05-15 Ha Youn Lee , Mehran Kardar

In the cellular phenomena of cytoplasmic streaming, molecular motors carrying cargo along a network of microtubules entrain the surrounding fluid. The piconewton forces produced by individual motors are sufficient to deform long…

Soft Condensed Matter · Physics 2021-01-20 David B. Stein , Gabriele De Canio , Eric Lauga , Michael J. Shelley , Raymond E. Goldstein

In this work we study the effect of a traffic light system on the flow of a single lane road by proposing a traffic model based on a cellular automaton that also includes behavioral considerations. We focus on the macroscopic…

Physics and Society · Physics 2021-02-03 A. Chacoma , M. N. Kuperman , G. Abramson

Power-law dwell times have been observed for molecular motors in living cells, but the origins of these trapped states are not known. We introduce a minimal model of motors moving on a two-dimensional network of filaments, and simulations…