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The problem called "String reconstruction from substrings" is a mathematical model of sequencing by hybridization that plays an important role in DNA sequencing. In this problem, we are given a blackbox oracle holding an unknown string…

Data Structures and Algorithms · Computer Science 2018-08-03 Kazuo Iwama , Junichi Teruyama , Shuntaro Tsuyama

This paper considers the problem of distributed source coding for a large network. A major obstacle that poses an existential threat to practical deployment of conventional approaches to distributed coding is the exponential growth of the…

Information Theory · Computer Science 2013-01-08 Kumar Viswanatha , Sharadh Ramaswamy , Ankur Saxena , Emrah Akyol , Kenneth Rose

In grammar-based compression a string is represented by a context-free grammar, also called a straight-line program (SLP), that generates only that string. We refine a recent balancing result stating that one can transform an SLP of size…

Data Structures and Algorithms · Computer Science 2021-07-02 Moses Ganardi

In scientific simulations, observations, and experiments, the cost of transferring data to and from disk and across networks has become a significant bottleneck that particularly impacts subsequent data analysis and visualization. To…

Databases · Computer Science 2023-08-24 Victor A. P. Magri , Peter Lindstrom

Detecting and measuring repetitiveness of strings is a problem that has been extensively studied in data compression and text indexing. However, when the data are structured in a non-linear way, like in the context of two-dimensional…

Data Structures and Algorithms · Computer Science 2024-04-11 Giuseppe Romana , Marinella Sciortino , Cristian Urbina

In the Dictionary-based String Matching (DSM) problem, a retrieval system has access to a source sequence and stores the position of a certain number of strings in a posting table. When a user inquires the position of a string, the…

Information Retrieval · Computer Science 2018-11-26 M. Suri , S. Rini

Grammar-based compression, where one replaces a long string by a small context-free grammar that generates the string, is a simple and powerful paradigm that captures many popular compression schemes. Given a grammar, the random access…

Data Structures and Algorithms · Computer Science 2016-11-17 Philip Bille , Anders Roy Christiansen , Patrick Hagge Cording , Inge Li Gørtz

Countless variants of the Lempel-Ziv compression are widely used in many real-life applications. This paper is concerned with a natural modification of the classical pattern matching problem inspired by the popularity of such compression…

Data Structures and Algorithms · Computer Science 2011-04-22 Pawel Gawrychowski

String analysis is the problem of reasoning about how strings are manipulated by a program. It has numerous applications including automatic detection of cross-site scripting (XSS). A popular string analysis technique includes symbolic…

Logic in Computer Science · Computer Science 2020-11-02 Lukas Holik , Petr Janku , Anthony W. Lin , Philipp Rümmer , Tomas Vojnar

This paper is an extended abstract of an analysis of term rewriting where the terms in the rewrite rules as well as the term to be rewritten are compressed by a singleton tree grammar (STG). This form of compression is more general than…

Logic in Computer Science · Computer Science 2013-02-27 Manfred Schmidt-Schauss

The Shortest Common Superstring problem (SCS) consists, for a set of strings S = {s_1,...,s_n}, in finding a minimum length string that contains all s_i, 1<= i <= n, as substrings. While a 2+11/30 approximation ratio algorithm has recently…

Data Structures and Algorithms · Computer Science 2018-05-02 Tristan Braquelaire , Marie Gasparoux , Mathieu Raffinot , Raluca Uricaru

In this paper, we propose a general sparse decomposition of dynamical systems provided that the vector field and constraint set possess certain sparse structures, which we call subsystems. This notion is based on causal dependence in the…

Optimization and Control · Mathematics 2024-08-06 Corbinian Schlosser , Milan Korda

In today's data-centric world, fast and effective compression of data is paramount. To measure success towards the second goal, Kempa and Prezza [STOC2018] introduce the string attractor, a combinatorial object unifying dictionary-based…

Data Structures and Algorithms · Computer Science 2024-07-23 Philip Whittington

We study the problem of distributed and rate-adaptive feature compression for linear regression. A set of distributed sensors collect disjoint features of regressor data. A fusion center is assumed to contain a pretrained linear regression…

Information Theory · Computer Science 2024-04-04 Aditya Deshmukh , Venugopal V. Veeravalli , Gunjan Verma

We revisit various string indexing problems with range reporting features, namely, position-restricted substring searching, indexing substrings with gaps, and indexing substrings with intervals. We obtain the following main results.…

Data Structures and Algorithms · Computer Science 2011-08-19 Philip Bille , Inge Li Goertz

This paper extends the sample complexity theory for ill-posed inverse problems developed in a recent work by the authors [`Compressed sensing for inverse problems and the sample complexity of the sparse Radon transform', J. Eur. Math. Soc.,…

Functional Analysis · Mathematics 2025-01-06 Giovanni S. Alberti , Alessandro Felisi , Matteo Santacesaria , S. Ivan Trapasso

This paper investigates the joint compression problem of a vector Gaussian source, where an individual distortion constraint is imposed on each source component. It is known that the rate-distortion function (RDF) is lower-bounded by the…

Information Theory · Computer Science 2026-02-09 Shuao Chen , Junyuan Gao , Yuxuan Shi , Yongpeng Wu , Giuseppe Caire , H. Vincent Poor , Wenjun Zhang

Compression has emerged as one of the essential deep learning research topics, especially for the edge devices that have limited computation power and storage capacity. Among the main compression techniques, low-rank compression via matrix…

Machine Learning · Computer Science 2021-12-02 Moonjung Eo , Suhyun Kang , Wonjong Rhee

We propose to reduce the original well-posed problem of compressive sensing to weighted-MAX-SAT. Compressive sensing is a novel randomized data acquisition approach that linearly samples sparse or compressible signals at a rate much below…

Information Theory · Computer Science 2019-05-28 Ramin Ayanzadeh , Milton Halem , Tim Finin

In dynamic MRI, sufficient time resolution can often only be obtained using imaging protocols which produce undersampled data for each image in the time series. This has led to the popularity of compressed sensing (CS) based image…