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This paper presents a probabilistic approach for DNA sequence analysis. A DNA sequence consists of an arrangement of the four nucleotides A, C, T and G and different representation schemes are presented according to a probability measure…

Quantitative Methods · Quantitative Biology 2010-02-12 Amrita Priyam , B. M. Karan , G. Sahoo

Neural codes are collections of binary strings motivated by patterns of neural activity. In this paper, we study algorithmic and enumerative aspects of convex neural codes in dimension 1 (i.e. on a line or a circle). We use the theory of…

Combinatorics · Mathematics 2017-02-23 Zvi Rosen , Yan X. Zhang

A Sidon sequence is a sequence of integers a_1 < a_2 < a_3 < ... with the property that the sums a_i+a_j (i\le j) are distinct. This work contains a survey of Sidon sequences and their generalizations, and an extensive annotated and…

Number Theory · Mathematics 2007-05-23 Kevin O'Bryant

This note is devoted to study the recurrent numerical sequence defined by: $a_0 = 0$, $a_n = \frac{n}{2} a_{n - 1} + (n - 1)!$ ($\forall n \geq 1$). Although, it is immediate that ${(a_n)}_n$ is constituted of rational numbers with…

Number Theory · Mathematics 2022-04-22 Bakir Farhi

Tight bounds on the block entropy of patterns of sequences generated by independent and identically distributed (i.i.d.) sources are derived. A pattern of a sequence is a sequence of integer indices with each index representing the order of…

Information Theory · Computer Science 2007-11-14 Gil I. Shamir

Existing sequence prediction methods are mostly concerned with time-independent sequences, in which the actual time span between events is irrelevant and the distance between events is simply the difference between their order positions in…

Machine Learning · Computer Science 2018-07-23 Yang Li , Nan Du , Samy Bengio

Researchers have demonstrated that humans are unable to generate a sequence of random numbers that corresponds in a statistical sense to a simple distribution such as the uniform distribution. The purpose of this article is to present the…

Physics and Society · Physics 2024-06-18 Vitaliy Grigoriev

A supersequence over a finite set is a sequence that contains as subsequence all permutations of the set. This paper defines an infinite array of methods to create supersequences of decreasing lengths. This yields the shortest known…

Combinatorics · Mathematics 2025-01-07 Oliver Tan

In this paper, we introduce the concept of curling subsequence of simple, finite and connected graphs. A curling subsequence is a maximal subsequence $C$ of the degree sequence of a simple connected graph $G$ for which the curling number…

Combinatorics · Mathematics 2015-07-08 Johan Kok , Naduvath Sudev , Chithra Sudev

For a graph $G$ and integer $k\geq1$, we define the token graph $F_k(G)$ to be the graph with vertex set all $k$-subsets of $V(G)$, where two vertices are adjacent in $F_k(G)$ whenever their symmetric difference is a pair of adjacent…

We determine the average number of distinct subsequences in a random binary string, and derive an estimate for the average number of distinct subsequences of a particular length.

Combinatorics · Mathematics 2013-10-29 Michael J. Collins

Circuit codes are constructed from induced cycles in the graph of the $n$ dimensional hypercube. They are both theoretically and practically important, as circuit codes can be used as error correcting codes. When constructing circuit codes,…

Combinatorics · Mathematics 2017-05-17 Kevin M. Byrnes

Orientable sequences of order n are infinite periodic sequences with symbols drawn from a finite alphabet of size k with the property that any particular subsequence of length n occurs at most once in a period in either direction. They were…

Combinatorics · Mathematics 2026-03-20 Chris J Mitchell , Peter R Wild

Constant-recursive sequences are those which satisfy a linear recurrence, so that later terms can be obtained as a linear combination of the previous ones. The rank of a constant-recursive sequence is the minimal number of previous terms…

Number Theory · Mathematics 2025-01-27 Eric Rowland , Jesus Sistos Barron

Two new constructions are presented for coils and snakes in the hypercube. Improvements are made on the best known results for snake-in-the-box coils of dimensions 9, 10 and 11, and for some other circuit codes of dimensions between 8 and…

Combinatorics · Mathematics 2012-01-10 Ed Wynn

The goal of this paper is to derive a simple recursion that generates a sequence of fractions approximating $\sqrt[n]{k}$ with increasing accuracy. The recursion is defined in terms of a series of first-order non-linear difference equations…

Dynamical Systems · Mathematics 2011-11-15 Joe Nance

74 new integer sequences are introduced in number theory, and for each of them is given a characterization, followed by open problems. each one a general question: how many primes each sequence has.

General Mathematics · Mathematics 2007-05-23 Florentin Smarandache

In this paper we explain how to easily compute gene clusters, formalized by classical or generalized nested common or conserved intervals, between a set of K genomes represented as K permutations. A b-nested common (resp. conserved)…

Data Structures and Algorithms · Computer Science 2013-12-03 Fabien de Montgolfier , Mathieu Raffinot , Irena Rusu

The known families of difference sets can be subdivided into three classes: difference sets with Singer parameters, cyclotomic difference sets, and difference sets with gcd$(v,n)>1$. It is remarkable that all the known difference sets with…

Combinatorics · Mathematics 2015-06-30 Tao Feng , Sihuang Hu , Shuxing Li , Gennian Ge

For a fixed integer $k$, we consider the set of noncrossing partitions, where both the block sizes and the difference between adjacent elements in a block is $1\bmod k$. We show that these $k$-indivisible noncrossing partitions can be…

Combinatorics · Mathematics 2021-07-26 Henri Mühle , Philippe Nadeau , Nathan Williams