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The paper describes an algorithm to compute a consensus sequence from a set of DNA sequences of approximatively identical length generated by 3rd sequencing generation technologies. Its purpose targets DNA storage and is guided by specific…

Data Structures and Algorithms · Computer Science 2021-05-12 Dominique Lavenier

An {\it Omnibus Sequence} of length $n$ is one that has each possible "message" of length $k$ embedded in it as a subsequence. We study various properties of Omnibus Sequences in this paper, making connections, whenever possible, to the…

Probability · Mathematics 2012-04-12 Sunil Abraham , Greg Brockman , Stephanie Sapp , Anant P. Godbole

In this note we associate a sequence of non-negative integers to any convergent series of positive real numbers and study this sequence for the series $\sum_{n \geq 1} n^{-k}$ where $k$ is an integer $\geq 2$.

Number Theory · Mathematics 2018-07-17 Soumyadip Sahu

In the field of pattern mining, a negative sequential pattern is specified by means of a sequence consisting of events to occur and of other events, called negative events, to be absent. For instance, containment of the pattern $\langle a\…

Artificial Intelligence · Computer Science 2020-02-24 Thomas Guyet , Philippe Besnard

Nonlinear complexity, as an important measure for assessing the randomness of sequences, is defined as the length of the shortest feedback shift registers that can generate a given sequence. In this paper, the structure of n-periodic binary…

Information Theory · Computer Science 2026-02-03 Qin Yuan , Chunlei Li , Xiangyong Zeng

Consider a sequence X_1, X_2,... of i.i.d. uniform random variables taking values in the alphabet set {1,2,...,d}. A k-superpattern is a realization of X_1,...,X_t that contains, as an embedded subsequence, each of the non-order-isomorphic…

Probability · Mathematics 2013-02-20 Anant Godbole , Martha Liendo

An infinite real sequence $\{a_n\}$ is called an invariant sequence of the first (resp., second) kind if $a_n=\sum_{k=0}^n {n \choose k} (-1)^k a_k$ (resp., $a_n=\sum_{k=n}^{\infty} {k \choose n} (-1)^k a_k$). We review and investigate…

Combinatorics · Mathematics 2017-06-07 Ik-Pyo Kim , Michael J. Tsatsomeros

For a set of positive integers $D$, a $k$-term $D$-diffsequence is a sequence of positive integers $a_1<a_2<\cdots<a_k$ such that $a_i-a_{i-1}\in D$ for $i=2,3,\cdots,k$. For $k\in\mathbb{Z}^+$ and $D\subset \mathbb{Z}^+$, we define…

Combinatorics · Mathematics 2022-12-07 Alexander Clifton

The sequence $A067549$ of The On-Line Encyclopedia of Integer Sequences is defined as $(a_k)_{k \geq 1}$ with $a_k$ being the determinant of the $k \times k$ matrix whose diagonal contains the first $k$ prime numbers and all other elements…

Number Theory · Mathematics 2025-12-19 Florian Pausinger

For Lucas sequences of the first kind (u_n) and second kind (v_n) defined as usual for positive n by u_n=(a^n-b^n)/(a-b), v_n=a^n+b^n, where a and b are either integers or conjugate quadratic integers, we describe the set of indices n for…

Number Theory · Mathematics 2009-08-27 Chris Smyth

We define a so-called square $k$-zig-zag shape as a part of the regular square grid. Considering the shape as a $k$-zig-zag digraph, we give values of its vertices according to the number of the shortest paths from a base vertex. It…

Combinatorics · Mathematics 2021-05-14 László Németh , László Szalay

A generalization of the well--known Fibonacci sequence is the $k$--Fibonacci sequence with some fixed integer $k\ge 2$. The first $k$ terms of this sequence are $0,\ldots,0,1$, and each term afterwards is the sum of the preceding $k$ terms.…

Number Theory · Mathematics 2020-08-25 Eric F. Bravo , Jhon J. Bravo , Carlos A. Gómez

A sequence is difference algebraic (or D-algebraic) if finitely many shifts of its general term satisfy a polynomial relationship; that is, they are the coordinates of a generic point on an affine hypersurface. The corresponding equations…

Algebraic Geometry · Mathematics 2025-10-13 Bertrand Teguia Tabuguia

A linear chord diagram of size $n$ is a partition of the set $\{1,2,\cdots,2n\}$ into sets of size two, called chords. From a table showing the number of linear chord diagrams of degree $n$ such that every chord has length at least $k$, we…

Combinatorics · Mathematics 2016-11-10 Everett Sullivan

Consider n unit intervals, say [1,2], [3,4], ..., [2n-1,2n]. Identify their endpoints in pairs at random, with all (2n-1)!! = (2n-1) (2n-3) ... 3 1 pairings being equally likely. The result is a collection of cycles of various lengths, and…

Combinatorics · Mathematics 2007-05-23 Nicholas Pippenger

Cyclic codes are an interesting type of linear codes and have applications in communication and storage systems due to their efficient encoding and decoding algorithms. They have been studied for decades and a lot of progress has been made.…

Information Theory · Computer Science 2011-11-15 Cunsheng Ding

Given a finite nonempty sequence S of integers, write it as XY^k, where Y^k is a power of greatest exponent that is a suffix of S: this k is the curling number of S. The Curling Number Conjecture is that if one starts with any initial…

Combinatorics · Mathematics 2014-09-17 Benjamin Chaffin , John P. Linderman , N. J. A. Sloane , Allan R. Wilks

Consider the number of permutations in the symmetric group on n letters that contain c copies of a given pattern. As c varies (with n held fixed) these numbers form a sequence whose properties we study for the monotone patterns and the…

Combinatorics · Mathematics 2007-05-23 Miklos Bona , Bruce Sagan , Vincent Vatter

Cyclic codes are an interesting subclass of linear codes and have been used in consumer electronics, data transmission technologies, broadcast systems, and computer applications due to their efficient encoding and decoding algorithms. In…

Information Theory · Computer Science 2012-07-12 Cunsheng Ding

Base sequences BS(m,n) are quadruples (A;B;C;D) of {+1,-1}-sequences, with A and B of length m and C and D of length n, such that the sum of their nonperiodic autocorrelation functions is a delta-function. Normal sequences NS(n) are base…

Combinatorics · Mathematics 2013-01-22 Dragomir Z. Djokovic