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Based on a non-equilibrium mechanism for spatial pattern formation we study how position information can be controlled by locally coupled discrete dynamical networks, similar to gene regulation networks of cells in a developing…

Molecular Networks · Quantitative Biology 2009-08-26 Thimo Rohlf , Stefan Bornholdt

Numerical models indicate that collective animal behaviour may emerge from simple local rules of interaction among the individuals. However, very little is known about the nature of such interaction, so that models and theories mostly rely…

Populations and Evolution · Quantitative Biology 2009-11-13 M. Ballerini , N. Cabibbo , R. Candelier , A. Cavagna , E. Cisbani , I. Giardina , V. Lecomte , A. Orlandi , G. Parisi , A. Procaccini , M. Viale , V. Zdravkovic

Collective behaviour is a widespread phenomenon in biology, cutting through a huge span of scales, from cell colonies up to bird flocks and fish schools. The most prominent trait of collective behaviour is the emergence of global order:…

Statistical Mechanics · Physics 2015-06-16 A. Attanasi , A. Cavagna , L. Del Castello , I. Giardina , S. Melillo , L. Parisi , O. Pohl , B. Rossaro , E. Shen , E. Silvestri , M. Viale

In this paper, we inspect well-known population genetics and social dynamics models. In these models, interacting individuals, while participating in a self-organizing process, give rise to the emergence of complex behaviors and patterns.…

Populations and Evolution · Quantitative Biology 2012-07-11 Sven Banisch , Tanya Araújo

From flocking birds to schooling fish, organisms interact to form collective dynamics across the natural world. Self-organization is present at smaller scales as well: cells interact and move during development to produce patterns in fish…

Quantitative Methods · Quantitative Biology 2024-07-16 Alexandria Volkening

The proper functioning of multicellular organisms requires the robust establishment of precise proportions between distinct cell-types. This developmental differentiation process typically involves intracellular regulatory and stochastic…

Cell Behavior · Quantitative Biology 2016-06-22 Benjamin Pfeuty , Kunihiko Kaneko

Flocking is a fascinating phenomenon observed across a wide range of living organisms. We investigate, based on a simple self-propelled particle model, how the emergence of ordered motion in a collectively moving group is influenced by the…

Biological Physics · Physics 2024-06-04 Vijay Kumar , Rumi De

The problem of natural selection in dispersal-structured populations consisting of individuals characterized by different diffusion coefficients is studied. The competition between the organisms is taken into account through the assumption…

Adaptation and Self-Organizing Systems · Physics 2020-05-01 E. Heinsalu , D. Navidad Maeso , M. Patriarca

Self-organization is the generation of order out of local interactions in non-equilibrium [1]. It is deeply connected to all fields of science from physics, chemistry to biology where functional living structures self-assemble[2] and…

Soft Condensed Matter · Physics 2018-10-24 Utsab Khadka , Viktor Holubec , Haw Yang , Frank Cichos

Many systems in nature, from ferromagnets to flocks of birds, exhibit ordering phenomena on the large scale. In physical systems order is statistically robust for large enough dimensions, with relative fluctuations due to noise vanishing…

Statistical Mechanics · Physics 2017-04-05 Andrea Cavagna , Irene Giardina , Asja Jelic , Edmondo Silvestri , Massimiliano Viale

From a mathematical point of view self-organization can be described as patterns to which certain dynamical systems modeling social dynamics tend spontaneously to be attracted. In this paper we explore situations beyond self-organization,…

Optimization and Control · Mathematics 2014-03-24 Marco Caponigro , Massimo Fornasier , Benedetto Piccoli , Emmanuel Trélat

We study the effect of correlations in generation times on the dynamics of population growth of microorganisms. We show that any non-zero correlation that is due to cell-size regulation, no matter how small, induces long-term oscillations…

Populations and Evolution · Quantitative Biology 2019-03-27 Farshid Jafarpour

Self-regulation of living tissue as an example of self-organization phenomena in hierarchical systems of biological, ecological, and social nature is under consideration. The characteristic feature of these systems is the absence of any…

Medical Physics · Physics 2009-11-30 Wassily Lubashevsky , Ihor Lubashevsky , Reinhard Mahnke

Multilevel selection and the evolution of cooperation are fundamental to the formation of higher-level organisation and the evolution of biocomplexity, but such notions are controversial and poorly understood in natural populations. The…

Populations and Evolution · Quantitative Biology 2012-08-03 Simon T. Powers , Christopher Heys , Richard A. Watson

There is now experimental evidence that nearest-neighbour interactions in flocks of birds are metric free, i.e. they have no characteristic interaction length scale. However, models that involve interactions between neighbours that are…

Quantitative Methods · Quantitative Biology 2015-06-22 Daniel J. G. Pearce , Matthew S. Turner

Temporal social networks of human interactions are preponderant in understanding the fundamental patterns of human behavior. In these networks, interactions occur locally between individuals (i.e., nodes) who connect with each other at…

Physics and Society · Physics 2022-10-11 Shaunette T. Ferguson , Teruyoshi Kobayashi

Swarming is a conspicuous behavioural trait observed in bird flocks, fish shoals, insect swarms and mammal herds. It is thought to improve collective awareness and offer protection from predators. Many current models involve the hypothesis…

Quantitative Methods · Quantitative Biology 2015-06-22 Daniel J. G. Pearce , A. M. Miller , George Rowlands , Matthew S. Turner

In animal societies as well as in human crowds, many observed collective behaviours result from self-organized processes based on local interactions among individuals. However, models of crowd dynamics are still lacking a systematic…

Physics and Society · Physics 2009-09-30 Mehdi Moussaid , Dirk Helbing , Simon Garnier , Anders Johansson , Maud Combe , Guy Theraulaz

Collective systems that self-organise to maximise the group's ability to collect and distribute information can be successful in environments with high spatial and temporal variation. Such organisations are abundant in nature, as sharing…

Populations and Evolution · Quantitative Biology 2025-10-28 R. S. Walker , G. Ramos-Fernandez , D. Boyer , S. E. Smith-Aguilar , X. O'Neill , M. J. Silk

In multicellular organisms, several cell states coexist. For determining each cell type, cell-cell interactions are often essential, in addition to intracellular gene expression dynamics. Based on dynamical systems theory, we propose a…

Cell Behavior · Quantitative Biology 2007-12-05 Akihiko Nakajima , Kunihiko Kaneko
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