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We report a high energy-resolution neutron backscattering study, combined with in-situ diffraction, to investigate slow molecular motions on nanosecond time scales in the fluid phase of phospholipid bilayers of…

Biological Physics · Physics 2009-10-02 Maikel C. Rheinstadter , Jhuma Das , Elijah J. Flenner , Beate Bruening , Tilo Seydel , Ioan Kosztin

We present a simple and highly adaptable method for simulating coarse-grained lipid membranes without explicit solvent. Lipids are represented by one head-bead and two tail-beads, with the interaction between tails being of key importance…

Soft Condensed Matter · Physics 2009-11-11 I. R. Cooke , M. Deserno

We theoretically investigate the relaxation dynamics of a nearly-flat binary lipid bilayer membrane by taking into account the membrane tension, hydrodynamics of the surrounding fluid, inter-monolayer friction and mutual diffusion in each…

Soft Condensed Matter · Physics 2016-05-05 Ryuichi Okamoto , Yuichi Kanemori , Shigeyuki Komura , Jean-Baptiste Fournier

We perform Brownian dynamics simulations of semiflexible colloidal sheets with hydrodynamic interactions and thermal fluctuations in shear flow. As a function of the ratio of bending rigidity to shear energy (a dimensionless quantity we…

Soft Condensed Matter · Physics 2021-10-22 Kevin S. Silmore , Michael S. Strano , James W. Swan

In this study we explore the statistics of pressure fluctuations in kinetic collisionless turbulence. A 2.5D kinetic particle-in-cell (PIC) simulation of decaying turbulence is used to investigate pressure balance via the evolution of…

We study the phase behavior of multicomponent lipid bilayer vesicles that can exhibit intriguing morphological patterns and lateral phase separation. We use a modified Landau-Ginzburg model capable of describing spatially uniform phases,…

Soft Condensed Matter · Physics 2018-06-22 Yongtian Luo , Lutz Maibaum

We consider how membrane fluctuations can modify the miscibility of lipid mixtures, that is to say how the phase diagram of a boundary-constrained membrane is modified when the membrane is allowed to fluctuate freely in the case of zero…

Soft Condensed Matter · Physics 2015-06-11 David S. Dean , V. Adrian Parsegian , R. Podgornik

With the aim of establishing a criterion for identifying when a lipid bilayer has reached steady state using the molecular dynamics simulation technique, lipid bilayers of different composition in their liquid crystalline phase were…

Soft Condensed Matter · Physics 2012-12-13 Rodolfo D. Porasso , José J. López Cascales

We introduce a class of stochastic weakly coupled map lattices, as models for studying heat conduction in solids. Each particle on the lattice evolves according to an internal dynamics that depends on its energy, and exchanges energy with…

Statistical Mechanics · Physics 2013-02-18 François Huveneers

Many coarse-grained models have been developed for equilibrium studies of lipid bilayer membranes. To achieve in simulations access to length-scales and time-scales difficult to attain in fully atomistic molecular dynamics, these…

Soft Condensed Matter · Physics 2023-02-28 Yaohong Wang , Jon Karl Sigurdsson , Paul J. Atzberger

A theoretical framework is developed to clarify the relation between the profiles of density and temperature in the Scrape Off Layer (SOL) with the fluctuations (filaments) that generate them. The framework is based on the dynamics of…

Plasma Physics · Physics 2016-11-24 F. Militello , J. T. Omotani

Recently, Rozovsky et al. reported on the morphology and dynamics of superstructures in three-component lipid bilayers containing saturated and unsaturated lipids as well as cholesterol [J. Am. Chem. Soc. 127, 36 (2005)]. We comment that…

Soft Condensed Matter · Physics 2012-01-31 S. Komura , N. Shimokawa , D. Andelman

A theoretical analysis of surface fluctuations of a freely standing thermotropic smectic-A liquid crystal film is provided, including the effects of viscous hydrodynamics. We find two surface dynamic modes (undulation and peristaltic). For…

Soft Condensed Matter · Physics 2009-10-30 Hsuan-Yi Chen , David Jasnow

Many lipid membrane-mediated transport processes--such as mechanically-gated channel activation and solute transport--involve structural and dynamical features on membrane thickness length scales. Most existing membrane models, however,…

Soft Condensed Matter · Physics 2025-08-29 Zachary G. Lipel , Yannick A. D. Omar , Dimitrios Fraggedakis

From a simple model for the driven motion of a planar interface under the influence of a diffusion field we derive a damped nonlinear oscillator equation for the interface position. Inside an unstable regime, where the damping term is…

Mesoscale and Nanoscale Physics · Physics 2015-06-03 Alexander L. Korzhenevskii , Richard Bausch , Rudi Schmitz

A mesoscopic coarse-grain model for computationally-efficient simulations of biomembranes is presented. It combines molecular dynamics simulations for the lipids, modeled as elastic chains of beads, with multiparticle collision dynamics for…

Soft Condensed Matter · Physics 2015-06-04 Mu-Jie Huang , Raymond Kapral , Alexander S. Mikhailov , Hsuan-Yi Chen

Under appropriate conditions, mixtures of cationic and neutral lipids and DNA in water condense into complexes in which DNA strands form local 2D smectic lattices intercalated between lipid bilayer membranes in a lamellar stack. These…

Soft Condensed Matter · Physics 2009-10-31 L. Golubovic , T. C. Lubensky , C. S. O'Hern

We have developed a realistic simulation of 2D dry foams under quasi-static shear. After a short transient, a shear-banding instability is observed. These results are compared with measurements obtained on real 2D (confined) foams. The…

Soft Condensed Matter · Physics 2009-11-07 Alexandre Kabla , Georges Debregeas

We investigate pores in fluid membranes by molecular dynamics simulations of an amphiphile-solvent mixture, using a molecular coarse-grained model. The amphiphilic membranes self-assemble into a lamellar stack of amphiphilic bilayers…

Soft Condensed Matter · Physics 2009-11-11 Claire Loison , Michel Mareschal , Friederike Schmid

Giant unilamellar vesicles (GUVs) composed of as few as three lipid species can phase separate into small-scale lipid domains with stripes and dots patterns. These patterns have been experimentally characterized in terms of how their size…

Soft Condensed Matter · Physics 2025-05-21 Qiwei Yu , Andrej Košmrlj
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