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A coarse-grained molecular model, which consists of a spherical particle and an orientation vector, is proposed to simulate lipid membrane on a large length scale. The solvent is implicitly represented by an effective attractive interaction…

Soft Condensed Matter · Physics 2015-05-20 Hiroshi Noguchi

A molecular model is proposed of a bilayer consisting of fully saturated DPPC and mono unsaturated DOPC. The model not only encompasses the constant density within the hydrophobic core of the bilayer, but also the tendency of chain segments…

Biological Physics · Physics 2009-11-10 R. Elliott , K. Katsov , M. Schick , I. Szleifer

We investigate pores in fluid membranes by molecular dynamics simulations of an amphiphile-solvent mixture, using a molecular coarse-grained model. The amphiphilic membranes self-assemble into a lamellar stack of amphiphilic bilayers…

Soft Condensed Matter · Physics 2009-11-11 Claire Loison , Michel Mareschal , Friederike Schmid

The van der Waals interaction between a lipid membrane and a substrate covered by a graphene sheet is investigated using the Lifshitz theory. The reflection coefficients are obtained for a layered planar system submerged in water. The…

Mesoscale and Nanoscale Physics · Physics 2013-11-22 Anh D. Phan , Trinh X. Hoang , The-Long Phan , Lilia M. Woods

In tissues, cells in direct physical contact with each other can exchange ions or molecules via protein clusters called gap junctions that form channels across the membranes of adjacent cells. Here, we use a simplified biomimetic approach,…

Biomembranes, which are mainly composed of neutral and charged lipids, exhibit a large variety of functional structures and dynamics. Here, we report a coarse-grained molecular dynamics (MD) simulation of the phase separation and…

Soft Condensed Matter · Physics 2016-11-07 Hiroaki Ito , Yuji Higuchi , Naofumi Shimokawa

Zhelev and Needham have recently created large, quasi-stable pores in artificial lipid bilayer vesicles [Biochim. Biophys. Acta 1147 (1993) 89]. Initially created by electroporation, the pores remain open for up to several seconds before…

Soft Condensed Matter · Physics 2009-10-28 J. David Moroz , Philip Nelson

Using molecular dynamic simulations we show that single-layers of molybdenum disulfide (MoS$_2$) and graphene can effectively reject ions and allow high water permeability. Solutions of water and three cations with different valence…

Soft Condensed Matter · Physics 2018-03-14 Mateus Henrique Köhler , José Rafael Bordin , Marcia C. Barbosa

We study the behavior of colloidal active particles interacting via steric repulsion in various quasi-1D geometries. We mainly focus on active particles with high P\'eclet number. We discuss 3 phenomena closely tied to those systems:…

Statistical Mechanics · Physics 2025-08-15 Šimon Pajger , František Slanina

Lipid membranes in a physiological context cannot be understood without taking into account their mobile environment. Here, we report on a high energy-resolution neutron backscattering study to investigate slow motions on nanosecond time…

Biological Physics · Physics 2007-05-23 Maikel C. Rheinstädter , Tilo Seydel , Tim Salditt

Thin organic films and two-dimensional (2D) molecular assemblies on solid surfaces yield the potential for applications in molecular electronics, optoelectronics, catalysis, and sensing. These applications rely on the intrinsic electronic…

We directly measured the interactions between a hydrophobic solid and a hydrophobic liquid separated by water using force spectroscopy, where colloidal probes were coated with graphene oxide (GO) to interact with immobilized heptane…

Soft Condensed Matter · Physics 2023-12-27 Avishi Abeywickrama , Douglas H. Adamson , Hannes C. Schniepp

Using a weak-coupling renormalization group formalism, we study competing ordered phases for repulsively interacting fermions on the bilayer honeycomb lattice away from half-filling, which is realized experimentally as doped bilayer…

Superconductivity · Physics 2014-05-26 James M. Murray , Oskar Vafek

The potential energy surface (PES) of interlayer interaction of infinite twisted bilayer graphene is calculated for a set of commensurate moir\'e patterns using the registry-dependent Kolmogorov-Crespi empirical potential. The calculated…

Mesoscale and Nanoscale Physics · Physics 2023-08-15 Alexander S. Minkin , Irina V. Lebedeva , Andrey M. Popov , Sergey A. Vyrko , Nikolai A. Poklonski , Yurii E. Lozovik

In biological membranes, alpha-tocopherols ({\alpha}-toc; vitamin E) protect polyunsaturated lipids from free radicals. Although the interactions of {\alpha}-toc with non-oxidized lipid bilayers have been studied, their on oxidized bilayers…

Biological Physics · Physics 2017-04-05 Phansiri Boonnoy , Mikko Karttunen , Jirasak Wong-ekkabut

The physicochemical properties of lipid bilayers (membranes) are closely associated with various cellular functions and are often evaluated using absorption and fluorescence spectroscopies. For instance, by employing fluorescent probes that…

Experiments on supported lipid bilayers featuring liquid ordered/disordered domains have shown that the spatial arrangement of the lipid domains and their chemical composition are strongly affected by the curvature of the substrate.…

Soft Condensed Matter · Physics 2021-02-17 Melissa Rinaldin , Piermarco Fonda , Luca Giomi , Daniela J. Kraft

Gaining access to the cell interior is fundamental for many applications, such as electrical recording, drug and biomolecular delivery. A very promising technique consists of culturing cells on nano/micro pillars. The tight adhesion and…

Continuum elastic models that account for membrane thickness variations are especially useful in the description of nanoscale deformations due to the presence of membrane proteins with hydrophobic mismatch. We show that terms involving the…

Soft Condensed Matter · Physics 2012-11-12 Anne-Florence Bitbol , Doru Constantin , Jean-Baptiste Fournier

A study of wetting was carried out on porous silicon films with pore diameters spanning three orders of magnitude. Water contact angle measurements on adjoining porous and nonporous regions yielded Wenzel roughness ratios that were either…

Materials Science · Physics 2022-11-15 S. J. Spencer , C. G. Deacon , G. T. Andrews