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To understand the structure of a large-scale biological, social, or technological network, it can be helpful to decompose the network into smaller subunits or modules. In this article, we develop an information-theoretic foundation for the…

Physics and Society · Physics 2007-05-23 Martin Rosvall , Carl T. Bergstrom

In resolving instances of a computational problem, if multiple instances of interest share a feature in common, it may be fruitful to compile this feature into a format that allows for more efficient resolution, even if the compilation is…

Computational Complexity · Computer Science 2015-03-03 Hubie Chen

Every Model of High-Level Computation (MHC) has an underlying composition mechanism for combining simple computing devices into more complex ones. Composition can be done by (explicitly or implicitly) defining control flow, data flow or any…

Logic in Computer Science · Computer Science 2026-05-22 Damian Arellanes

Natural materials achieve adaptive behavior through hierarchical organization and coupled mechanisms across scales. Their translation into engineering, however, remains largely heuristic. What is missing is a formal translation framework…

Soft Condensed Matter · Physics 2026-04-30 Lee Marom , Skylar Tibbits , Gioele Zardini , Markus J. Buehler

In several applications, including in synthetic biology, one often has input/output data on a system composed of many modules, and although the modules' input/output functions and signals may be unknown, knowledge of the composition…

Machine Learning · Computer Science 2026-04-28 Jichi Wang , Eduardo D. Sontag , Domitilla Del Vecchio

This paper introduces a conceptual, yet quantifiable, architecture framework by extending the notion of system modularity in its broadest sense. Acknowledging that modularity is not a binary feature and comes in various types and levels,…

Systems and Control · Computer Science 2016-08-05 Babak Heydari , Mohsen Mosleh , Kia Dalili

There is a growing need for abstractions in logic specification languages such as FO(.) and ASP. One technique to achieve these abstractions are templates (sometimes called macros). While the semantics of templates are virtually always…

Logic in Computer Science · Computer Science 2020-02-19 Ingmar Dasseville , Matthias van der Hallen , Gerda Janssens , Marc Denecker

Mathematical models are increasingly used in both academia and the pharmaceutical industry to understand how phenotypes emerge from systems of molecular interactions. However, their current construction as monolithic sets of equations…

Molecular Networks · Quantitative Biology 2007-10-19 Aneil Mallavarapu , Matthew Thomson , Benjamin Ullian , Jeremy Gunawardena

Many complex tasks can be decomposed into simpler, independent parts. Discovering such underlying compositional structure has the potential to enable compositional generalization. Despite progress, our most powerful systems struggle to…

A formal description of a Cyber-Physical system should include a rigorous specification of the computational and physical components involved, as well as their interaction. Such a description, thus, lends itself to a compositional model…

Logic in Computer Science · Computer Science 2016-12-16 Tobias Kappé , Farhad Arbab , Carolyn Talcott

Metabolism displays striking and robust regularities in the forms of modularity and hierarchy, whose composition may be compactly described. This renders metabolic architecture comprehensible as a system, and suggests the order in which…

Molecular Networks · Quantitative Biology 2015-06-05 Rogier Braakman , Eric Smith

In this paper we present an analysis of the complexities of large group collaboration and its application to develop detailed requirements for collaboration schema for Autonomous Systems (AS). These requirements flow from our development of…

Multiagent Systems · Computer Science 2010-01-26 Peter Johnson , Rachid Hourizi , Neil Carrigan , Nick Forbes

Compositionality is a key strategy for addressing combinatorial complexity and the curse of dimensionality. Recent work has shown that compositional solutions can be learned and offer substantial gains across a variety of domains, including…

Machine Learning · Computer Science 2019-04-30 Clemens Rosenbaum , Ignacio Cases , Matthew Riemer , Tim Klinger

This project investigates whether functional specialization or modularity can support the development of multiple behaviors. In principle, modular solutions of this type can facilitate the development of multiple behaviors since each module…

Robotics · Computer Science 2020-06-12 Victor Massagué Respall

This paper examines the relationship between gestures' function and form in design collaboration. It adopts a cognitive design research viewpoint. The analysis is restricted to gesticulations and emblems. The data analysed come from an…

Human-Computer Interaction · Computer Science 2010-10-14 Willemien Visser

Designing and implementing systems as an interconnection of smaller subsystems is a common practice for modularity and standardization of components and design algorithms. Although not typically cast in this framework, many of these…

Systems and Control · Computer Science 2016-06-29 Sefa Demirtas , Alan V. Oppenheim

Hierarchically designed mechanical metamaterials involve nested levels of structural organization, mimicking natural structures (such as bones, wood, and bird feathers) to create advanced functional materials. Compositional hierarchy, a…

Soft Condensed Matter · Physics 2026-05-21 Shammo Dutta , Girish Krishnan , Sree Kalyan Patiballa

Although there is a somewhat standard formalization of computability on countable sets given by Turing machines, the same cannot be said about uncountable sets. Among the approaches to define computability in these sets, order-theoretic…

Logic in Computer Science · Computer Science 2022-09-07 Pedro Hack , Daniel A. Braun , Sebastian Gottwald

We develop a general formalism for representing and understanding structure in complex systems. In our view, structure is the totality of relationships among a system's components, and these relationships can be quantified using information…

Statistical Mechanics · Physics 2014-09-17 Benjamin Allen , Blake C. Stacey , Yaneer Bar-Yam

To analyze the evolutionary emergence of structural complexity in physical processes we introduce a general, but tractable, model of objects that interact to produce new objects. Since the objects--\emph{$epsilon$-machines}--have well…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 James P. Crutchfield , Olof Gornerup