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Related papers: Comparing Graphs via Persistence Distortion

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In this paper we give a survey of methods used to calculate values of resistance distance (also known as effective resistance) in graphs. Resistance distance has played a prominent role not only in circuit theory and chemistry, but also in…

Combinatorics · Mathematics 2021-09-15 E. J. Evans , A. E. Francis

As network research becomes more sophisticated, it is more common than ever for researchers to find themselves not studying a single network but needing to analyze sets of networks. An important task when working with sets of networks is…

Social and Information Networks · Computer Science 2019-07-26 James P. Bagrow , Erik M. Bollt

We address the problem of merging graph and feature-space information while learning a metric from structured data. Existing algorithms tackle the problem in an asymmetric way, by either extracting vectorized summaries of the graph…

Machine Learning · Computer Science 2020-02-17 Nicolo Colombo

Graph similarity metrics serve far-ranging purposes across many domains in data science. As graph datasets grow in size, scientists need comparative tools that capture meaningful differences, yet are lightweight and scalable. Graph Relative…

Combinatorics · Mathematics 2019-08-08 Sinan G. Aksoy , Kathleen E. Nowak , Stephen J. Young

In this paper, we introduce a connection between two classical concepts of graph theory: \; metric dimension and distinguishing number. For a given graph $G$, let ${\rm dim}(G)$ and $D(G)$ represent its metric dimension and distinguishing…

Combinatorics · Mathematics 2023-12-15 Meysam Korivand , Nasrin Soltankhah

We study fundamental graph parameters such as the Diameter and Radius in directed graphs, when distances are measured using a somewhat unorthodox but natural measure: the distance between $u$ and $v$ is the minimum of the shortest path…

Data Structures and Algorithms · Computer Science 2019-06-18 Mina Dalirrooyfard , Virginia Vassilevska Williams , Nikhil Vyas , Nicole Wein , Yinzhan Xu , Yuancheng Yu

Built upon the shoulders of graph theory, the field of complex networks has become a central tool for studying real systems across various fields of research. Represented as graphs, different systems can be studied using the same analysis…

Physics and Society · Physics 2024-05-30 Gorka Zamora-López , Matthieu Gilson

Persistent homology is a popular computational tool for analyzing the topology of point clouds, such as the presence of loops or voids. However, many real-world datasets with low intrinsic dimensionality reside in an ambient space of much…

Machine Learning · Computer Science 2024-11-01 Sebastian Damrich , Philipp Berens , Dmitry Kobak

Graph coarsening is a technique for solving large-scale graph problems by working on a smaller version of the original graph, and possibly interpolating the results back to the original graph. It has a long history in scientific computing…

Machine Learning · Computer Science 2023-06-16 Yifan Chen , Rentian Yao , Yun Yang , Jie Chen

Important data mining problems such as nearest-neighbor search and clustering admit theoretical guarantees when restricted to objects embedded in a metric space. Graphs are ubiquitous, and clustering and classification over graphs arise in…

Combinatorics · Mathematics 2018-01-16 Jose Bento , Stratis Ioannidis

The theory of multidimensional persistent homology was initially developed in the discrete setting, and involved the study of simplicial complexes filtered through an ordering of the simplices. Later, stability properties of…

Computational Geometry · Computer Science 2013-03-28 Niccolò Cavazza , Marc Ethier , Patrizio Frosini , Tomasz Kaczynski , Claudia Landi

Distance plays a fundamental role in measuring similarity between objects. Various visualization techniques and learning tasks in statistics and machine learning such as shape matching, classification, dimension reduction and clustering…

Machine Learning · Statistics 2025-04-23 Dianbin Bao , Kisung You , Lizhen Lin

Persistent homology is a popular and useful tool for analysing finite metric spaces, revealing features that can be used to distinguish sets of unlabeled points and as input into machine learning pipelines. The famous stability theorem of…

Computational Geometry · Computer Science 2024-05-10 Philip Smith , Vitaliy Kurlin

Directed graphs arise in many applications where computing persistent homology helps to encode the shape and structure of the input information. However, there are only a few ways to turn the directed graph information into an undirected…

Computational Geometry · Computer Science 2026-04-30 David E. Muñoz , Elizabeth Munch , Firas A. Khasawneh

Topological data analysis is an approach to study shape of a data set by means of topology. Its main object of study is the persistence diagram, which represents the topological features of the data set at different spatial resolutions.…

Algebraic Topology · Mathematics 2025-11-05 Azmeer Nordin , Mohd Salmi Md Noorani , Nurulkamal Masseran , Mohd Sabri Ismail , Nur Firyal Roslan

Building upon [1], this study aims to introduce fractal geometry into graph theory, and to establish a potential theoretical foundation for complex networks. Specifically, we employ the method of substitution to create and explore…

Dynamical Systems · Mathematics 2024-05-29 Nero Ziyu Li

Many concrete problems are formulated in terms of a finite set of points in $R^n$ which, via the ambient Euclidean metric, becomes a finite metric space. To obtain information from such a space, it is often useful to associate a graph to…

Combinatorics · Mathematics 2022-01-06 Juan M. Alonso

In topological data analysis, we want to discern topological and geometric structure of data, and to understand whether or not certain features of data are significant as opposed to simply random noise. While progress has been made on…

Computational Geometry · Computer Science 2020-01-10 So Mang Han , Taylor Okonek , Nikesh Yadav , Xiaojun Zheng

We present a simple iterative strategy for measuring the connection strength between a pair of vertices in a graph. The method is attractive in that it has a linear complexity and can be easily parallelized. Based on an analysis of the…

Discrete Mathematics · Computer Science 2009-09-24 Jie Chen , Ilya Safro

Understanding and adequately assessing the difference between a true and a learnt causal graphs is crucial for causal inference under interventions. As an extension to the graph-based structural Hamming distance and structural intervention…

Machine Learning · Statistics 2023-08-01 Mihir Dhanakshirur , Felix Laumann , Junhyung Park , Mauricio Barahona