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We construct electronic oscillator from acellular slime mould Physarum polycephalum. The slime mould oscillator is made of two electrodes connected by a protoplasmic tube of the living slime mould. A protoplasmic tube has an average…

Emerging Technologies · Computer Science 2014-03-31 Andrew Adamatzky

We present a novel implementation of an extremum preserving anisotropic diffusion solver for thermal conduction on the unstructured moving Voronoi mesh of the AREPO code. The method relies on splitting the one-sided facet fluxes into normal…

Cosmology and Nongalactic Astrophysics · Physics 2016-02-17 Rahul Kannan , Volker Springel , Rüdiger Pakmor , Federico Marinacci , Mark Vogelsberger

This article represents the computational model for spacial addresation of the sensors in the dynamically changing real-time internet of things system. The model bases on the Voronoi diagrams as a basic data structure. Problem - the correct…

Data Structures and Algorithms · Computer Science 2022-01-11 Almagul Kondybayeva , Giovanna Di Marzo

The round-trip distance function on a geographic network (such as a road network, flight network, or utility distribution grid) defines the "distance" from a single vertex to a pair of vertices as the minimum length tour visiting all three…

Data Structures and Algorithms · Computer Science 2019-09-04 Matthew T. Dickerson , Michael T. Goodrich , Thomas D. Dickerson

Worm-like filaments that are propelled homogeneously along their tangent vector are studied by Brownian dynamics simulations. Systems in two dimensions are investigated, corresponding to filaments adsorbed to interfaces or surfaces. A large…

Soft Condensed Matter · Physics 2016-08-23 Rolf E. Isele-Holder , Jens Elgeti , Gerhard Gompper

Flow of cerebrospinal fluid in perivascular spaces is a key mechanism underlying brain transport and clearance. In this paper, we present a mathematical and numerical formalism for reduced models of pulsatile viscous fluid flow in networks…

Fluid Dynamics · Physics 2021-11-25 Cécile Daversin-Catty , Ingeborg G. Gjerde , Marie E. Rognes

The size distributions of 2D and 3D Voronoi cells and of cells of $V_p(2,3)$,--2D cut of 3D Voronoi diagram--are explored, with the single-parameter (re-scaled) gamma distribution playing a central role in the analytical fitting.…

Astrophysics · Physics 2011-09-20 Lorenzo Zaninetti

Recently, it was shown that the amoeba-like cell {\it Physarum polycephalum} when exposed to a pattern of periodic environmental changes learns and adapts its behavior in anticipation of the next stimulus to come. Here we show that such…

Cell Behavior · Quantitative Biology 2009-11-21 Yuriy V. Pershin , Steven La Fontaine , Massimiliano Di Ventra

Negative conductance elements are key to shape the input-output behavior at the terminals of a network through localized positive feedback amplification. The balance of positive and negative differential conductances creates singularities…

Optimization and Control · Mathematics 2025-04-11 Alessio Franci , Bart Besselink , Arjan van der Schaft

Simulating soft matter systems such as the cytoskeleton can enable deep understanding of experimentally observed phenomena. One challenge of modeling such systems is realistic description of the steric repulsion between nearby polymers.…

Soft Condensed Matter · Physics 2021-12-22 Carlos Floyd , Aravind Chandrasekaran , Haoran Ni , Qin Ni , Garegin A. Papoian

Detachment and fracture are central to many tissue-level processes, but they are challenging to simulate with Voronoi-type models that typically assume a confluent tissue. Here we analyze the finite Voronoi model, a nonconfluent extension…

Soft Condensed Matter · Physics 2026-04-20 Wei Wang , Brian A. Camley

Cord-forming fungi form extensive networks that continuously adapt to maintain an efficient transport system. As osmotically driven water uptake is often distal from the tips, and aqueous fluids are incompressible, we propose that growth…

Tissues and Organs · Quantitative Biology 2010-05-31 Luke Heaton , Eduardo Lopez , Philip K. Maini , Mark D. Fricker , Nick S. Jones

Animals use past experiences to adapt future behavior. To enable this rapid learning, vertebrates and invertebrates have evolved analogous neural structures like the vertebrate cerebellum or insect mushroom body. A defining feature of these…

Neurons and Cognition · Quantitative Biology 2025-12-24 Lucas Rudelt , Fabian Mikulasch , Viola Priesemann , André Ferreira Castro

The Voronoi Diagram is a geometrical structure that is widely used in scientific or technological applications where proximity is a relevant aspect to consider, and it also resembles natural phenomena such as cellular banks, rock formations…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-09-02 Rodrigo Stevenson , Cristóbal A. Navarro

While fine-tuning pre-trained networks has become a popular way to train image segmentation models, such backbone networks for image segmentation are frequently pre-trained using image classification source datasets, e.g., ImageNet. Though…

Computer Vision and Pattern Recognition · Computer Science 2022-07-08 Xuhong Li , Haoyi Xiong , Yi Liu , Dingfu Zhou , Zeyu Chen , Yaqing Wang , Dejing Dou

We study the Voronoi Diagram of Rotating Rays, a Voronoi structure where the input sites are rays and the distance function between a point and a site/ray, is the counterclockwise angular distance. This novel Voronoi diagram is motivated by…

Computational Geometry · Computer Science 2023-04-25 Carlos Alegría , Ioannis Mantas , Evanthia Papadopoulou , Marko Savić , Carlos Seara , Martin Suderland

We study a phenomenological model in which the simulated packing of hard, attractive spheres on a prolate spheroid surface with convexity constraints produces structures identical to those of prolate virus capsid structures. Our simulation…

Soft Condensed Matter · Physics 2009-11-13 Ting Chen , Sharon C. Glotzer

Advancements in materials design and manufacturing have allowed for the production of ordered and disordered metamaterials with diverse and novel properties. Hyperuniform two-phase heterogeneous materials, which anomalously suppress density…

Soft Condensed Matter · Physics 2025-06-27 Charles Emmett Maher , Katherine A. Newhall

Voronoi tessellations of scale-invariant fractal sets are characterized by topological and metrical properties that are significantly different from those of natural cellular structures. As an example we analyze Voronoi diagrams of…

Statistical Mechanics · Physics 2009-10-31 Haye Hinrichsen , Gudrun Schliecker

We study the sub-grid scale characteristics of a vorticity-transport-based approach for large-eddy simulations. In particular, we consider a multi-dimensional upwind scheme for the vorticity transport equations and establish its properties…

Fluid Dynamics · Physics 2021-02-05 Daniel Foti , Karthik Duraisamy