English
Related papers

Related papers: Model Checking Tap Withdrawal in C. Elegans

200 papers

Caenorhabditis elegans (C. elegans) illustrated remarkable behavioral plasticities including complex non-associative and associative learning representations. Understanding the principles of such mechanisms presumably leads to constructive…

Neurons and Cognition · Quantitative Biology 2017-03-28 Ramin M. Hasani , Magdalena Fuchs , Victoria Beneder , Radu Grosu

Web graphs form a family of planar directed graphs with boundary that can be used to model quantum $\mathfrak{sl}_n$-invariant vectors. Standard Young tableaux on an $n \times k$ rectangle naturally index a basis for $\mathfrak{sl}_n$ web…

Combinatorics · Mathematics 2025-10-28 Lucas Adams Cowan , Ronja Eilfort , Kerry Seekamp , Julianna Tymoczko

We consider the effects of temporal delay in a neural feedback system with excitation and inhibition. The topology of our model system reflects the anatomy of the avian isthmic circuitry, a feedback structure found in all classes of…

Biological Physics · Physics 2007-09-18 Sebastian F. Brandt , Ralf Wessel

This paper analyzes a random walk model for the level lines appearing in the entropic repulsion phenomena of three-dimensional discrete random interfaces above a hard wall; we are particularly motivated by the low-temperature (2+1)D…

Probability · Mathematics 2025-02-17 Milind Hegde , Yujin H. Kim , Christian Serio

Unlike many physical nonequilibrium systems, in biological systems, the coupling to external energy sources is not a fixed parameter but adaptively controlled by the system itself. We do not have theoretical frameworks that allow for such…

Populations and Evolution · Quantitative Biology 2025-06-30 Ankit Dhanuka , Avi I. Flamholz , Arvind Murugan , Akshit Goyal

Distinguishing and controlling the extent of Mottness is important for materials where the energy scales of the onsite Coulomb repulsion U and the bandwidth W are comparable. Here we report the ultrafast electronic dynamics of 1T-TaS$_2$ by…

Mesoscale and Nanoscale Physics · Physics 2023-03-29 Changhua Bao , Haoyuan Zhong , Fei Wang , Tianyun Lin , Haoxiong Zhang , Zhiyuan Sun , Wenhui Duan , Shuyun Zhou

We report an experimental and theoretical investigation of a system whose dynamics is dominated by an intricate interplay between three key concepts of modern physics: topology, nonlinearity, and spontaneous symmetry breaking. The…

Designing optimal structure favorable to diffusion and effectively controlling the trapping process are crucial in the study of trapping problem---random walks with a single trap. In this paper, we study the trapping problem occurring on…

Statistical Mechanics · Physics 2015-08-12 Yihang Yang , Zhongzhi Zhang

The Tribomechadynamics Research Challenge (TRC) was a blind prediction of the vibration behavior of a thin plate clamped on two sides using bolted joints. The first bending mode's natural frequency and damping ratio were requested as…

Signal Processing · Electrical Eng. & Systems 2024-10-22 Arati Bhattu , Svenja Hermann , Nidhal Jamia , Florian Müller , Maren Scheel , Christoph Schwingshackl , H. Nevzat Özgüven , Malte Krack

Living cells exhibit an important out-of-equilibrium mechanical activity, mainly due to the forces generated by molecular motors. These motor proteins, acting individually or collectively on the cytoskeleton, contribute to the violation of…

Biological Physics · Physics 2009-01-21 Francois Gallet , Delphine Arcizet , Pierre Bohec , Alain Richert

We report on the asymptotic behaviour of a new model of random walk, we term the bindweed model, evolving in a random environment on an infinite multiplexed tree. The term \textit{multiplexed} means that the model can be viewed as a nearest…

Probability · Mathematics 2007-05-23 Mikhail Menshikov , Dimitri Petritis , Serguei Popov

Random walks represent an important tool for probing the structural and dynamical properties of networks and modeling transport and diffusion processes on networks. However, when individuals' movement becomes dictated by more complicated…

Pattern Formation and Solitons · Physics 2022-11-24 Per Sebastian Skardal

We examine traveling-wave solutions on a regular ring network with one additional long-range link that spans a distance d. The nodes obey the FitzHugh-Nagumo kinetics in the excitable regime. The additional shortcut induces a plethora of…

Adaptation and Self-Organizing Systems · Physics 2015-06-23 Thomas Isele , Benedikt Hartung , Philipp Hövel , Eckehard Schöll

We develop an artificial neural circuit for contour tracking and navigation inspired by the chemotaxis of the nematode Caenorhabditis elegans. In order to harness the computational advantages spiking neural networks promise over their…

Neural and Evolutionary Computing · Computer Science 2014-10-30 Shibani Santurkar , Bipin Rajendran

This paper focuses on the escape problem of a harmonically-forced classical particle from a purely-quartic truncated potential well. The latter corresponds to various engineering systems that involve purely cubic restoring force and absence…

Chaotic Dynamics · Physics 2021-05-20 Maor Farid

We investigate the behavior of {\it Lumbriculus variegatus} in circular and polygonal chambers and show that the worms align with the boundaries as they move forward and then become dynamically trapped at the concave corners over prolonged…

Soft Condensed Matter · Physics 2026-02-26 Sohum Kapadia , Arshad Kudrolli

Conformational transitions are ubiquitous in biomolecular systems, have significant functional roles and are subject to evolutionary pressures. Here we provide a first theoretical framework for topological transition, i.e. conformational…

Disordered Systems and Neural Networks · Physics 2015-09-02 Alireza Mashaghi , Abolfazl Ramezanpour

A common trait of complex systems is that they can be represented by means of a network of interacting parts. It is, in fact, the network organisation (more than the parts) what largely conditions most higher-level properties, which are not…

Populations and Evolution · Quantitative Biology 2019-07-15 Ricard Sole , Sergi Valverde

Transmission Electron Microscopy enables high-resolution imaging of materials, but the resulting images are difficult to interpret directly. One way to address this is exit wave reconstruction, i.e., the recovery of the complex-valued…

Numerical Analysis · Mathematics 2025-11-11 Moussa Atwi , Benjamin Berkels

The appearance of detached recirculation regions in wakes with base bleed determines the aerodynamic properties of many natural organisms and technological applications. In this work we introduce an analytical model which captures certain…

Fluid Dynamics · Physics 2021-03-17 K Steiros , N Bempedelis , L Ding